Pairwise Alignments

Query, 1017 a.a., RND efflux transporter from Pseudomonas putida KT2440

Subject, 1031 a.a., efflux RND transporter permease subunit from Pantoea sp. MT58

 Score =  709 bits (1831), Expect = 0.0
 Identities = 392/1015 (38%), Positives = 596/1015 (58%), Gaps = 4/1015 (0%)

Query: 3    GSFNLSDWALKHQSFVWYLMFVSLLMGIFSYFNLGREEDPSFTIKTMVIQTRWPGATQDE 62
            G FNLS  A++ ++   +L+ +  + GI S+F LGR EDP FT+K M I + WPGAT  E
Sbjct: 4    GRFNLSALAVRERAITLFLIILITVAGILSFFELGRAEDPPFTVKQMTIISAWPGATAQE 63

Query: 63   TLYQVTDRIEKKLEELDSLDYTKSYTRPGESTVYVYLRDTTKAKDIPDIWYQVRKKIQDI 122
               QV + +EK+L+EL   D +++YTRPG +   + L+D T    + + +YQ RKK+ D 
Sbjct: 64   MQDQVAEPLEKRLQELRWYDRSETYTRPGLAFTMLSLQDKTPPSQVQEEFYQARKKLGDE 123

Query: 123  RGEFPAGIQGPGFNDEFGDVFGSIYAFTADGLTLRQLRDYVEQARAEVRDVPNIGKIELV 182
                PAG+ GP  NDEF DV  ++ A  A G   R L    E  R ++  +P + K+ ++
Sbjct: 124  SRNLPAGVIGPMINDEFSDVTFALLALKAKGEPQRLLVREAESLRQQLLHLPGVKKVNII 183

Query: 183  GTQDEVLYLNFSTRKLAALGIDQRQVMQALQAQNAVTPAGMIEAGPERISVRTSGQFASE 242
            G Q E +Y++FS  +LA LGI  +++  AL  QN +TPAG I+    ++ +R  G F   
Sbjct: 184  GEQSERIYVSFSHDRLATLGITPQEIFAALNDQNVLTPAGSIDTQGPQVFIRLEGAFDKL 243

Query: 243  KDLQTVNLRINDRFFRLADIADIERGYVDPPSPMFRYNGQTAIGLAIGMKAGGNIQVFGA 302
            + ++   +    R  +LAD+A + RGY DP +   R+ G+ A+ L I M+ G N    G 
Sbjct: 244  EKIRETPIVAQGRSLKLADVATVTRGYEDPATFKVRHQGEPALLLGIVMRDGWNGLALGK 303

Query: 303  ALKKRMDQVVQDLPVGVGVHTVSDQAVVVKQAVGGFTSALFEAVVIVLAVSFVSLGVRAG 362
            AL      + Q +P+G+ +  V+DQ+V ++ AV  F      A+++V+ V FVS+G R G
Sbjct: 304  ALAAETVSINQAMPLGMSLTQVTDQSVNIRSAVDEFMIKFVVALLVVMVVCFVSMGWRVG 363

Query: 363  LVVACSIPLVLAMVFVFMEYSGITMQRISLGALIIALGLLVDDAMITVEVMVTRLEMGES 422
            +VVA ++PL LA+VFV ME SG    RI+LG+LI+ALGLLVDDA+I +E+MV ++E G  
Sbjct: 364  VVVAAAVPLTLAVVFVVMEASGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEEGYD 423

Query: 423  KEQAATFAYTSTAFPMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAVIAVALIVSWVVAV 482
            + +A+ +A++ TA PML GTLVT  GF+P G   S+AGEYT  +F ++ +ALI SW+VAV
Sbjct: 424  RIKASAYAWSHTAAPMLAGTLVTAVGFMPNGFAQSTAGEYTSNMFWIVGIALIASWIVAV 483

Query: 483  FFAPVLGVHILKGDKL--KAHEAEPGRVGRAFEGGLLWCMRNRWLTIIGTVV-LFALAIF 539
             F P LGV +L   K     H A            LL  +  R   + G V+ LF  A+ 
Sbjct: 484  VFTPYLGVKLLPDIKTVEGGHAAIYNTRNYNRFRQLLTSVIARKGWVAGVVIALFITAVL 543

Query: 540  CMRFVQNQFFPSSDRPEILVDLNLPQNASIEETRKVVDRFEARIKDDPDLVHWSTYIGQG 599
             M  V+ QFFP+SDRPE+LV++ LP  ++IE+T     + E  +K   +    +TYIGQG
Sbjct: 544  GMTLVKKQFFPTSDRPEVLVEVQLPYGSAIEQTAAAAKKIETWLKQQREAKIVTTYIGQG 603

Query: 600  AIRFYLPLDQQLQNPYYAQLVIVSKGFEERQAMMDRLQKILHEEFV-GVGTNVQSLEMGP 658
              RFYL +  +L +P +A+LVI++   + R+ +  +L+  +    V      V  L  GP
Sbjct: 604  PPRFYLAMAPELPDPAFAKLVILTDSQDARETLKTQLRTAIARGLVPEAQVRVTQLVFGP 663

Query: 659  PVGRPIQYRVSGADIDQVRKHAIELATLLDQNEHIGEMIYDWNEPGKVLRVEIAQDKARQ 718
                P+ +RV G D  ++   A ++  +L  +  +  +  DW  P   L   + Q++ + 
Sbjct: 664  YSPYPVAWRVMGPDPVRLHVIANQVEAVLRASPMMRTVNTDWGAPVPTLHFSLDQNRLQA 723

Query: 719  LGLSSEDVANVMNSIVSGVQITQVNDNIYLVDVVARAEDSERGSPDTLQNLQILTPNGTS 778
            +GL+S +VA  +  +++GV +T V ++I  V VV RA    R  P  + +  +    G  
Sbjct: 724  VGLTSSEVARQLQFLLTGVPVTTVREDIRAVQVVGRAAGDIRLDPAKIADFTLAGAAGQR 783

Query: 779  IPLLSFATVRYELEQPLVWRRDRKPTITIKASVNGEIQPTDLVAQLKPKIDEFASKLPVG 838
            IPL     V+ ++E PL+ RRDR PTIT++  +   +QP D+   L   +    + LP G
Sbjct: 784  IPLSQIGEVQVKMEDPLLRRRDRTPTITVRGDIADSLQPPDVSTALNKTLQPIIATLPAG 843

Query: 839  FEVATGGTVEESAKAQGPIRKVIPLMLFLMATFLMIQLHSVQKLFLVVSVAPLGLIGVVL 898
            + +   G +EES KA   +  + P+M+ +    +++Q+ S+  + +V   APLGLIGVV 
Sbjct: 844  YRIELAGAIEESGKATQAMAPLFPIMIAITLLIIILQVRSLSAMVMVFLTAPLGLIGVVP 903

Query: 899  ALVPTGTPMGFVAILGILALAGIIIRNSVILVTQIDEFEAQGLSPWDAVVEATNHRRRPI 958
             L+  G P G  A++G++AL+GI++RN++IL+ QI   E QGL+P+ AVVEAT  R RP+
Sbjct: 904  TLLLFGQPFGINALVGLIALSGILMRNTLILIGQIHHNEQQGLAPFAAVVEATVQRARPV 963

Query: 959  LLTAAAASLGMIPIAREVFWGPMAYAMIGGIIVATLLTLLFLPALYVAWYKIREP 1013
            LLTA AA L  IP+   VFWG +AY +IGG +  TL+TL+FLPA+Y  W++IR P
Sbjct: 964  LLTAMAAVLAFIPLTHSVFWGTLAYTLIGGTLGGTLITLVFLPAMYAIWFRIRLP 1018