Pairwise Alignments

Query, 1017 a.a., RND efflux transporter from Pseudomonas putida KT2440

Subject, 1065 a.a., efflux RND transporter permease subunit from Dyella japonica UNC79MFTsu3.2

 Score =  900 bits (2327), Expect = 0.0
 Identities = 475/1047 (45%), Positives = 662/1047 (63%), Gaps = 33/1047 (3%)

Query: 2    KGSFNLSDWALKHQSFVWYLMFVSLLMGIFSYFNLGREEDPSFTIKTMVIQTRWPGATQD 61
            +G FNLS WAL+HQSFV +LM +  + G+ SY  L + EDP FT K MVIQ+ WPGA   
Sbjct: 13   EGRFNLSAWALRHQSFVIFLMVMITVFGMLSYSRLSQSEDPPFTFKVMVIQSFWPGADAK 72

Query: 62   ETLYQVTDRIEKKLEELDSLDYTKSYTRPGESTVYVYLRDTTKAKDIPDIWYQVRKKIQD 121
            +   QVTDRI +KL+E  S+D+ +SY+RPGES ++  ++D+  A  +PD WYQVRKK+ D
Sbjct: 73   QVQDQVTDRISRKLQETPSIDFLRSYSRPGESLIFFNIKDSAPASSVPDTWYQVRKKVGD 132

Query: 122  IRGEFPAGIQGPGFNDEFGDVFGSIYAFTADGLTLRQLRDYVEQARAEVRDVPNIGKIEL 181
            IR + P G+QGP FNDEFGDV+ +IYA   DG T  QL DY +Q RAE+  VP +GK++ 
Sbjct: 133  IRAQLPPGVQGPFFNDEFGDVYTNIYALEGDGFTPAQLHDYADQLRAELLRVPGVGKVDF 192

Query: 182  VGTQDEVLYLNFSTRKLAALGIDQRQVMQALQAQNAVTPAGMIEAGPERISVRTSGQFAS 241
            +G Q++ + +     +L+ LGI  +Q+ +A+ AQNAV  AG++    +R+ VR SGQF+ 
Sbjct: 193  LGDQNQRITIEIPNARLSKLGISPQQIAEAINAQNAVASAGVMSTADDRVYVRPSGQFSD 252

Query: 242  EKDLQTVNLRINDRFFRLADIADIERGYVDPPSPMFRYNGQTAIGLAIGMKAGGNIQVFG 301
               L+   LR   + FRL DIA I RGY DPP    R+  Q  +G+ I M+ GG++   G
Sbjct: 253  VAALENTLLRAGGQSFRLGDIATIRRGYDDPPGQQVRFMSQQVLGVGITMQPGGDVIHLG 312

Query: 302  AALKKRMDQVVQDLPVGVGVHTVSDQAVVVKQAVGGFTSALFEAVVIVLAVSFVSLGVRA 361
             AL +   ++ + LP G+ +  V+     V  +V  F  ++ EAV IVL VS +SLG+R 
Sbjct: 313  KALDEATARLQKRLPAGLKLAEVTSMPHAVAHSVDDFLESVAEAVAIVLLVSLLSLGLRT 372

Query: 362  GLVVACSIPLVLAMVFVFMEYSGITMQRISLGALIIALGLLVDDAMITVEVMVTRLEMGE 421
            G+VV  SIP VLA   + ME  GI + ++SLG L++ALGLLVDDA+I VE+M  +LE G 
Sbjct: 373  GMVVVISIPFVLAATALCMELMGIGLHKVSLGTLVLALGLLVDDAIIAVEMMAVKLEQGW 432

Query: 422  SKEQAATFAYTSTAFPMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAVIAVALIVSWVVA 481
            S+ +AA FAYTSTAFPMLTGTLVTV+GF+PI L  S  GEYT ++F V A+AL++SW+ A
Sbjct: 433  SRTRAAAFAYTSTAFPMLTGTLVTVSGFLPIALAKSGTGEYTRSIFEVSAIALLLSWLAA 492

Query: 482  VFFAPVLGVHILKGDKLKAHEAE-------PGRVGRA----------------------- 511
            V   P+LG H L     +            P R   A                       
Sbjct: 493  VIVIPLLGYHFLPEHHARVQPGSEWWARFMPARWNEARRANAKTRPEHGGDIEIYDTAFY 552

Query: 512  --FEGGLLWCMRNRWLTIIGTVVLFALAIFCMRFVQNQFFPSSDRPEILVDLNLPQNASI 569
              F   L +C+ +R L ++ TVVLF +++     V  QFFPSSDRPE+L+DL LP+ AS 
Sbjct: 553  QRFRRMLHYCLTHRVLVLVVTVVLFVVSMAGFGLVPKQFFPSSDRPELLIDLRLPEGASF 612

Query: 570  EETRKVVDRFEARIKDDPDLVHWSTYIGQGAIRFYLPLDQQLQNPYYAQLVIVSKGFEER 629
            + T   V R E  +KD  ++ ++ +++G GA RFYLPLDQQL  P +AQ V+ +K  E+R
Sbjct: 613  DATLVQVKRMEQVLKDRKEVANYVSFVGSGAPRFYLPLDQQLGQPNFAQFVVTAKDVEQR 672

Query: 630  QAMMDRLQKILHEEFVGVGTNVQSLEMGPPVGRPIQYRVSGADIDQVRKHAIELATLLDQ 689
            +A+   L  +L  +F  V T V  LE GPPVG P+Q+RVSG DI  VR  A ++AT++  
Sbjct: 673  EALAKALDSVLAHDFSAVRTRVSRLENGPPVGFPVQFRVSGDDIATVRGIAEKIATVMRA 732

Query: 690  NEHIGEMIYDWNEPG-KVLRVEIAQDKARQLGLSSEDVANVMNSIVSGVQITQVNDNIYL 748
            +     + +DW+EP  + +R +I Q  AR+LG+SS+DVA+ +   +SG  +TQ  +   L
Sbjct: 733  DPRTRNVQFDWDEPAERSVRFDIDQAAARRLGVSSQDVADFLAMSLSGTTVTQYRERDKL 792

Query: 749  VDVVARAEDSERGSPDTLQNLQILTPNGTSIPLLSFATVRYELEQPLVWRRDRKPTITIK 808
            + V  RA  SER  PD ++ L + TP G +IPL     V Y LE  ++W RDR+P+I ++
Sbjct: 793  IGVDLRAPKSERVQPDQIERLALPTPGGAAIPLAQLGKVHYGLEYGVIWARDRQPSINVQ 852

Query: 809  ASVNGEIQPTDLVAQLKPKIDEFASKLPVGFEVATGGTVEESAKAQGPIRKVIPLMLFLM 868
            +      Q  D+   +  K+ E    LPVG+ +  GG+VE++AKAQG I + +PLM+  +
Sbjct: 853  SDTRNGAQGLDVTNAIDAKLGELRKGLPVGYRIEVGGSVEQNAKAQGSINEQMPLMVIAV 912

Query: 869  ATFLMIQLHSVQKLFLVVSVAPLGLIGVVLALVPTGTPMGFVAILGILALAGIIIRNSVI 928
             T LMIQL S+ + F+VV  APLGLIGV+ +L+    P GFVA+LG +A+ GII+RNSVI
Sbjct: 913  LTLLMIQLQSIGRTFMVVLTAPLGLIGVIASLLLFRQPFGFVAMLGTIAMFGIIMRNSVI 972

Query: 929  LVTQIDEFEAQGLSPWDAVVEATNHRRRPILLTAAAASLGMIPIAREVFWGPMAYAMIGG 988
            LV QI++    G S W+A+V AT  R RPI LTAAAA L +IP+ R  F+GPMA A++GG
Sbjct: 973  LVDQIEQDIRDGHSRWEAIVGATVRRFRPITLTAAAAVLALIPLLRSNFFGPMATALMGG 1032

Query: 989  IIVATLLTLLFLPALYVAWYKIREPQK 1015
            I VAT+LTL +LPALY  WY++R  ++
Sbjct: 1033 ITVATILTLFYLPALYAVWYRVRSDEQ 1059