Pairwise Alignments

Query, 1017 a.a., RND efflux transporter from Pseudomonas putida KT2440

Subject, 1037 a.a., multidrug transporter AcrB from Cupriavidus basilensis FW507-4G11

 Score =  900 bits (2325), Expect = 0.0
 Identities = 469/1024 (45%), Positives = 662/1024 (64%), Gaps = 14/1024 (1%)

Query: 5    FNLSDWALKHQSFVWYLMFVSLLMGIFSYFNLGREEDPSFTIKTMVIQTRWPGATQDETL 64
            FNLS WAL+HQ    YL+ V LL G+F++F LG++EDP FT + MV+Q  WPGAT ++  
Sbjct: 6    FNLSRWALEHQPLTRYLLVVLLLGGLFAFFQLGQDEDPPFTFRVMVVQAFWPGATAEQIA 65

Query: 65   YQVTDRIEKKLEELDSLDYTKSYTRPGESTVYVYLRDTTKAKDIPDIWYQVRKKIQDIRG 124
             QVTD+IE++L+E+   D  +S+++PGE+TV   L+DT  AKD   IWY VRKK+ DI  
Sbjct: 66   VQVTDKIERQLQEVPYADKIRSFSKPGETTVIFQLKDTAPAKDTAQIWYTVRKKVGDIAQ 125

Query: 125  EFPAGIQGPGFNDEFGDVFGSIYAFTADGLTLRQLRDYVEQARAEVRDVPNIGKIELVGT 184
              P G++GP FNDEFGDV+GSIYA +ADG   ++LR+Y +  R ++  VP++ K+ L+G 
Sbjct: 126  TLPPGVRGPFFNDEFGDVYGSIYALSADGFNYKELREYADLVRQQLLRVPSVAKVSLIGL 185

Query: 185  QDEVLYLNFSTRKLAALGIDQRQVMQALQAQNAVTPAGMIEAGPERISVRTSGQFASEKD 244
            QDE +Y+ F+  + A LG+D   +   +  QN++T +G++    + + VR SGQFA+  D
Sbjct: 186  QDEKVYIEFNQARFAQLGLDINAIADQISQQNSMTASGVLVTPGDNLQVRLSGQFANVAD 245

Query: 245  LQTVNLRINDRF--FRLADIADIERGYVDPPSPMFRYNGQTAIGLAIGMKAGGNIQVFGA 302
            L+ + LR  +     RL DIA + RGYVDPP+   R+ G+  IGL I M+ GG+I   G 
Sbjct: 246  LENLVLRGPNGIANIRLGDIAHVYRGYVDPPASKMRFQGKEVIGLGISMERGGDIIAMGK 305

Query: 303  ALKKRMDQVVQDLPVGVGVHTVSDQAVVVKQAVGGFTSALFEAVVIVLAVSFVSLG---- 358
             L+  MD +   LPVG+ +  V +Q   V+++VG F   L EAVVIVL VSFVSLG    
Sbjct: 306  NLRAAMDGLRGQLPVGIELDQVQNQPEAVERSVGEFVHVLIEAVVIVLGVSFVSLGLHTK 365

Query: 359  -----VRAGLVVACSIPLVLAMVFVFMEYSGITMQRISLGALIIALGLLVDDAMITVEVM 413
                 VR GLVVA +IPLVLA+ F+FM   GI + +ISLGALI+ALGLLVDDA+I VE+M
Sbjct: 366  PLRIDVRPGLVVALTIPLVLAVTFLFMNIFGIGLHKISLGALIVALGLLVDDAIIAVEMM 425

Query: 414  VTRLEMGESKEQAATFAYTSTAFPMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAVIAVA 473
            V +LE G SK +AATFAYTSTA PMLTGTL+T AGF+P+GL  S+ GEYTF +FAV A+A
Sbjct: 426  VRKLEEGFSKMEAATFAYTSTAMPMLTGTLITAAGFLPVGLARSTVGEYTFAIFAVTAMA 485

Query: 474  LIVSWVVAVFFAPVLGVHILKGDKL---KAHEAEPGRVGRAFEGGLLWCMRNRWLTIIGT 530
            L++SW+ AV+F P LG  +LK       + HE         F   + WC+  R   I+ T
Sbjct: 486  LVLSWLAAVYFTPYLGYLLLKARPAGEGEQHEVFDTPFYNRFRRLVHWCVTWRKTVIVIT 545

Query: 531  VVLFALAIFCMRFVQNQFFPSSDRPEILVDLNLPQNASIEETRKVVDRFEARIKDDPDLV 590
            +V F L ++  +FV+ QFFP S RPE++V+L LP+  S  +T     RFEA ++ D ++ 
Sbjct: 546  LVAFGLGLYAFKFVEKQFFPDSSRPELMVELWLPEGTSFAQTEAEAKRFEAALRGDREIA 605

Query: 591  HWSTYIGQGAIRFYLPLDQQLQNPYYAQLVIVSKGFEERQAMMDRLQKILHEEFVGVGTN 650
              ++++G GA RFYLPLDQ       AQ++++      R  +  R+  +L  +F  +   
Sbjct: 606  SLTSFVGSGAPRFYLPLDQIFPQTNVAQVIVMPAEVALRARVRQRVVDLLARDFPQLRGR 665

Query: 651  VQSLEMGPPVGRPIQYRVSGADIDQVRKHAIELATLLDQNEHIGEMIYDWNEPGKVLRVE 710
            V+ L  GPPV  P+Q+RV G +   VRK A E+  ++  N +   +  +WNE  KVLR++
Sbjct: 666  VKLLPNGPPVPYPVQFRVIGPEAAGVRKLADEVRAVVSANPNTVGVNDNWNESVKVLRLD 725

Query: 711  IAQDKARQLGLSSEDVANVMNSIVSGVQITQVNDNIYLVDVVARAEDSERGSPDTLQNLQ 770
            I QD+AR LG+S+  +A V  ++++GV + Q  D   L+D++ RA  +ER +   LQN+Q
Sbjct: 726  IDQDRARALGVSTTAIARVTQTVLTGVAVGQYRDGDKLIDILMRAPRNERDAMSDLQNVQ 785

Query: 771  ILTPNGTSIPLLSFATVRYELEQPLVWRRDRKPTITIKASVNGEIQPTDLVAQLKPKIDE 830
            + T +G  +PL   A + +  E  ++WR +R   +T++A V   IQ   + AQ+ P++D+
Sbjct: 786  VPTASGRVVPLTQVARIAFRSEPGVIWRENRDFGVTVQADVAEGIQGPTVTAQINPRLDK 845

Query: 831  FASKLPVGFEVATGGTVEESAKAQGPIRKVIPLMLFLMATFLMIQLHSVQKLFLVVSVAP 890
              ++LP G+ +   G  EES KA   I   +PL +FL+ T LM+QLHS  +  +V    P
Sbjct: 846  LRAQLPAGYRITVAGAEEESGKAGASIAAQLPLCIFLIFTLLMLQLHSFSRSLMVFLTGP 905

Query: 891  LGLIGVVLALVPTGTPMGFVAILGILALAGIIIRNSVILVTQIDEFEAQGLSPWDAVVEA 950
            LGLIG    L+    PMGFVA LGI AL G+IIRNSVILV QI++    G   WDA+VE+
Sbjct: 906  LGLIGAAATLLLLNAPMGFVAQLGITALLGMIIRNSVILVDQIEQDIRAGAPVWDAIVES 965

Query: 951  TNHRRRPILLTAAAASLGMIPIAREVFWGPMAYAMIGGIIVATLLTLLFLPALYVAWYKI 1010
               R RPI+LTAAAA L MIP++R VFWGPMA A++GG+++AT LTLLFLPALY AW+++
Sbjct: 966  AVRRCRPIILTAAAAVLAMIPLSRSVFWGPMAVAIMGGLVIATALTLLFLPALYAAWFRV 1025

Query: 1011 REPQ 1014
            + P+
Sbjct: 1026 KAPE 1029