Pairwise Alignments

Query, 574 a.a., ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 530 a.a., thiamine/thiamine pyrophosphate ABC transporter permease ThiP from Vibrio cholerae E7946 ATCC 55056

 Score = 91.7 bits (226), Expect = 7e-23
 Identities = 105/476 (22%), Positives = 190/476 (39%), Gaps = 32/476 (6%)

Query: 88  AFTVAAIVVPLAYLFAFALQRTLIPAKGLWRGISLLPLLAPSMLPAIALVYLFGNQGLLR 147
           AF    + V LA   A AL +   P + L   +  + L+ P ++    L+ ++GN G L 
Sbjct: 55  AFWSTVLSVGLAIPVAHALSQRRFPGRDLLLKLFAMTLVLPVLVAIFGLIAIYGNSGFLA 114

Query: 148 GLLSD-------NIYGFWGIVLGEAIYTFPHALMILLSALSLADARLFDAASSMGAGSWR 200
             L         +IYG  GI+L   ++  P+A  +LL +L    +      + +G   W+
Sbjct: 115 KTLHSVGFPLPFSIYGLNGILLAHVLFNLPYASRLLLQSLEAIPSEQHKLCAHLGMSRWQ 174

Query: 201 AFTSITWPASRQAVFAAFCLVFTLTITDFGVPVVVGGDYQVLALE--AYKAVVGQQQFGR 258
            F  + WP  RQ +     LVF L  T F   + +GG  +   +E   Y+A+        
Sbjct: 175 KFKWVEWPRLRQQLPHVAGLVFMLCFTSFATVMALGGGPKATTIELAIYQAIKFDFDLQI 234

Query: 259 GALIGM-VLLLPALFSFTVDAWLRRRQGEAMGGRAQVFEPKPSRGRDACFLTIVLLVCAA 317
           GAL+ +  +LL  L +FT+  +   R   +   +      + S        + ++  C  
Sbjct: 235 GALLAIWQMLLCTLLTFTLQRFSHSRPMNSAASKVTERWVRDSWRAKVWDASWIVAACVL 294

Query: 318 LLVVIGMAVYSSLVTFWPYNLSLSLRHYMFEDTAGGGWLAYRNSVTMAIGTALIGSIVIF 377
           +L  + M V + L +     L   L       T+G  W A  +S+ +A   +L  S+ + 
Sbjct: 295 VLPPLVMVVLAGLNS----KLGKVL-------TSGDFWSAVSHSLQVA---SLASSLALA 340

Query: 378 TGAYLMEKTQGQRL-----LNHALRLLSFIPMAVPGLVLGLGYVFFFNLNGNPLHVLYGG 432
           +G  ++  ++  RL       + +  ++ + +  PGLV+  G    F L  N   V    
Sbjct: 341 SGIAMLLTSRALRLKAAHRRANGVEWIATLILVTPGLVVSTG---LFLLLRNITDVFRLA 397

Query: 433 MGLLVVCTIAHYLTTAQMTATTALRQLDGEFEAAALSLKAPLYKHFLRVTVPICLPALLD 492
             ++V       L     T +  +  L  ++E    SL    ++ F  V        L  
Sbjct: 398 YWIVVAVNALMALPYVVKTLSQPMWHLAQQYELLCASLGMSGWRRFRLVEWRALRKPLSH 457

Query: 493 IIRYLFVSAMTTVSAAIFLYSPDTLLAAIAVLNMDDAGNVGGAAAMSTLILLTSAG 548
                F+ +M  +SA     S D     + +  +  +  +  AA ++  +L+ S G
Sbjct: 458 AFAIGFLLSMGDLSAIALFGSQDFRTLPLYLYQLLGSYQMDTAAVVALAMLIMSVG 513



 Score = 61.6 bits (148), Expect = 8e-14
 Identities = 56/242 (23%), Positives = 104/242 (42%), Gaps = 13/242 (5%)

Query: 36  LILLVLAVLMPLLAIFWRGFSGEAGQGGGLLAARELFTSASFHWLLGNSLSVAFTVAAIV 95
           ++   + VL PL+ +   G + + G+         + TS  F   + +SL VA   +++ 
Sbjct: 288 IVAACVLVLPPLVMVVLAGLNSKLGK---------VLTSGDFWSAVSHSLQVASLASSLA 338

Query: 96  VPLAYLFAFALQRTLIPAKGLWRGISLLPLLAPSMLPAIALVYLFGNQGLLRGLLSDNIY 155
             LA   A  L    +  K   R  + +  +A  +L    LV   G   LLR +      
Sbjct: 339 --LASGIAMLLTSRALRLKAAHRRANGVEWIATLILVTPGLVVSTGLFLLLRNITDVFRL 396

Query: 156 GFWGIVLGEAIYTFPHALMILLSALSLADARLFDAASSMGAGSWRAFTSITWPASRQAVF 215
            +W +V   A+   P+ +  L   +     +     +S+G   WR F  + W A R+ + 
Sbjct: 397 AYWIVVAVNALMALPYVVKTLSQPMWHLAQQYELLCASLGMSGWRRFRLVEWRALRKPLS 456

Query: 216 AAFCLVFTLTITDFGVPVVVGG-DYQVLALEAYKAVVGQQQFGRGALIGMVLLLPALFSF 274
            AF + F L++ D     + G  D++ L L  Y+ ++G  Q    A++ + +L+ ++  F
Sbjct: 457 HAFAIGFLLSMGDLSAIALFGSQDFRTLPLYLYQ-LLGSYQMDTAAVVALAMLIMSVGWF 515

Query: 275 TV 276
            V
Sbjct: 516 YV 517