Pairwise Alignments

Query, 341 a.a., ABC transporter, periplasmic binding protein from Pseudomonas putida KT2440

Subject, 348 a.a., spermidine/putrescine ABC transporter substrate-binding protein PotD from Klebsiella michiganensis M5al

 Score = 48.5 bits (114), Expect = 2e-10
 Identities = 67/288 (23%), Positives = 115/288 (39%), Gaps = 27/288 (9%)

Query: 3   KHLALAVAVSAVFSLQASAADTQLTVYTALEAEQLKT-YKQAFEKANPDIEIKWVRDSTG 61
           +HL  A A++    + A+ AD   T+Y     E +     + F K      I    +S  
Sbjct: 6   RHLLAAGALAV--GMSAAHADDSKTLYFYNWTEYVPPGLLEQFTKETGIKVIYSTYESNE 63

Query: 62  IITAKLLAEKERPQADAVWGLAASSLAILDQ---NGMLEAYAPKDLGKISGNYRDAANPP 118
            + AKL   K     D  + L   S   +D+    GML+      L        +  N P
Sbjct: 64  TMYAKLKTYK-----DGAYDLVVPSTYFVDKMRKEGMLQKIDKSKLSNFGNLDPEMLNKP 118

Query: 119 AWVGMD-----VWAAT-ICFNTIEAEKQGLSKPVSWQDLTKPEYKGKIVMPNPASSGTGF 172
                D     +W AT I  N+ E + + ++   SW DL KPEYK  +++ + A     F
Sbjct: 119 FDPNNDYSIPYIWGATAIGINSDEIDPKTVT---SWADLWKPEYKSSLLLTDDAREV--F 173

Query: 173 LDVSAWLQTFGEPQGWAYMDALHQNIGQYV-----HSGSKPCKLAAAGEFPIGISFEYPA 227
                 L   G       ++A +  + + +      +   P      GE  +G+ +   A
Sbjct: 174 QVALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMVWNGSA 233

Query: 228 VQLKRQGAPLDIVLPKEGLGWEIEATAVIKGSPKADVAKRLADFSASP 275
              ++ G PL++V PKEG  + +++ ++   +   D A +L +F   P
Sbjct: 234 WVARQAGTPLEVVWPKEGGIFWMDSLSIPANAKNVDGALKLINFLLRP 281