Pairwise Alignments

Query, 284 a.a., RNA polymerase factor sigma-32 from Pseudomonas putida KT2440

Subject, 335 a.a., RNA polymerase sigma factor RpoS from Vibrio cholerae E7946 ATCC 55056

 Score =  105 bits (261), Expect = 2e-27
 Identities = 75/268 (27%), Positives = 141/268 (52%), Gaps = 12/268 (4%)

Query: 18  EAYVHTVNSIPLLTVEQERDLGERLYYEQDVEAARQMVMAHLRFVVHIARSYAGYGLAQA 77
           + Y+  +   PLLT E+E  L  R     D  A ++M+ ++LR VV I+R Y+  GLA  
Sbjct: 60  QMYLSEIGFSPLLTAEEEV-LYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALL 118

Query: 78  DLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILRNWRIVKVATTKAQRKLF 137
           DLI+EGN+GL++AV++F+PE G R  ++A  WI+  I   ++   R +++      ++L 
Sbjct: 119 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL-PIHVVKELN 177

Query: 138 FNLRSQKKRLAWLNNDEV-HRVAESLGVEPREVREMESRLSGQDMAFDPAAEADDDSAFQ 196
             LR+ ++    L+++     +A  L     +V +M  RL+ +  + D     D D A  
Sbjct: 178 IYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKM-LRLNERISSVDTPIGGDGDKALL 236

Query: 197 SPAHYLEDHRYDPAVQLEDADWSDNSTSNLHEALQGLDERSRDILYQRW--LAEEKATLH 254
                 + H  DP    +D    D+   +L   L  L+ + +++L +R+  L  E +TL 
Sbjct: 237 DILP--DSHNADPEFSTQD----DDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLE 290

Query: 255 ELADKYSVSAERIRQLEKNAMNKVKALI 282
           E+  + +++ ER+RQ++   + +++ ++
Sbjct: 291 EVGREINLTRERVRQIQVEGLRRLREIL 318