Pairwise Alignments

Query, 284 a.a., RNA polymerase factor sigma-32 from Pseudomonas putida KT2440

Subject, 404 a.a., RNA polymerase sigma factor SigC from Synechocystis sp000284455 PCC 6803

 Score = 93.6 bits (231), Expect = 6e-24
 Identities = 73/261 (27%), Positives = 132/261 (50%), Gaps = 33/261 (12%)

Query: 30  LTVEQERDLGERLYYEQDVEAARQMVMAHLRFVVHIARSYAGYGLAQADLIQEGNVGLMK 89
           LTVE+  ++ +     Q + A   M+ A+LR VV +A+ Y   GL   DLIQEG +GL +
Sbjct: 150 LTVEELENIEK-----QGITAKAHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLER 204

Query: 90  AVKRFNPEMGVRLVSFAVHWIKAEIHEFILRNWRIVKVAT---------TKAQRKLFFNL 140
           AV++F+P  G R  +++  WI+  I   I    R++++            +AQRK+    
Sbjct: 205 AVEKFDPTKGYRFSTYSYWWIRQGITRAIATQSRMIRLPVHITEKLNKIKRAQRKI---- 260

Query: 141 RSQKKRLAWLNNDEVHRVAESLGVEPREVREMESRLSGQDMAFDPAAEADDDSAFQSPAH 200
            SQ+K     +  ++  VAE LG+ P +VRE+ +++  + ++ +     D D+       
Sbjct: 261 -SQEKG----HTPKIDEVAEELGMTPEQVREVLTQVP-RSVSLELKVGQDKDTELMD--- 311

Query: 201 YLEDHRYDPAVQLEDADWSDNSTSNLHEALQGLDERSRDILYQRWLAEEKA--TLHELAD 258
            LE     P    ED    +   +++ E L  L  R ++++  R+  ++    +L E+  
Sbjct: 312 LLETDTQSP----EDELMREALQNDMQEILLDLTPREQEVIALRFGFQDGVAHSLSEIGR 367

Query: 259 KYSVSAERIRQLEKNAMNKVK 279
             ++S ER+RQ+E  A+ K++
Sbjct: 368 ILNLSRERVRQIEAKALQKLR 388