Pairwise Alignments

Query, 284 a.a., RNA polymerase factor sigma-32 from Pseudomonas putida KT2440

Subject, 311 a.a., DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like from Synechococcus elongatus PCC 7942

 Score = 97.4 bits (241), Expect = 3e-25
 Identities = 88/291 (30%), Positives = 139/291 (47%), Gaps = 42/291 (14%)

Query: 20  YVHTVNSIPLLTVEQERDLGER------LYYEQDVE--------------AARQMVMAHL 59
           Y+ ++  IPLLT E+E +L  +      L    D E              A  +M+ A+L
Sbjct: 24  YLSSIGRIPLLTAEEEVELSRKVQLMMALLENPDAESNSENQAVLQAGQRAKTKMLKANL 83

Query: 60  RFVVHIARSYAGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFIL 119
           R VV +A+ Y   GL   DLIQEG++GL +AV++F+P +G +  ++A  WI+  +   I 
Sbjct: 84  RLVVSVAKKYQNQGLELLDLIQEGSLGLERAVEKFDPALGYKFSTYAYWWIRQSMTRAID 143

Query: 120 RNWRIVKVATTKAQ-----RKLFFNLRSQKKRLAWLNNDEVHRVAESLGVEPREVREMES 174
            + R +++    ++     +K+   L  Q KRL          +AE+L +  ++V EM  
Sbjct: 144 NHARTIRLPIHVSEKISRIKKMTRELTHQLKRL-----PSRAEIAEALKLPLQDV-EMLL 197

Query: 175 RLSGQDMAFDPAAEADDDSAFQSPAHYLEDHRYDPAVQLEDADWSDNSTSN--LHEALQG 232
             S    + D  A  DD  +F      L D   DP   LE  D  D    +  +   L  
Sbjct: 198 SQSTPCTSLDAQARGDDGRSF------LGDLIPDPK-SLEPMDAMDRHIQHEQISTWLAH 250

Query: 233 LDERSRDILYQRWLAE--EKATLHELADKYSVSAERIRQLEKNAMNKVKAL 281
           L ER + +L  R+     E+ TL E+  + +VS ERIRQ+E  A+ K++ L
Sbjct: 251 LTEREQQVLQLRFGLHDGEQHTLAEIGRRLNVSRERIRQVEARALQKLRVL 301