Pairwise Alignments

Query, 284 a.a., RNA polymerase factor sigma-32 from Pseudomonas putida KT2440

Subject, 288 a.a., RNA polymerase factor sigma-32 from Sinorhizobium meliloti 1021

 Score =  162 bits (409), Expect = 1e-44
 Identities = 94/263 (35%), Positives = 146/263 (55%), Gaps = 8/263 (3%)

Query: 28  PLLTVEQERDLGERLYYEQDVEAARQMVMAHLRFVVHIARSYAGYGLAQADLIQEGNVGL 87
           P L  ++E  L +    + D EA  ++ M+H+R V+ +A  +  +GL   DL+QEG++GL
Sbjct: 18  PYLERDEEHALAQAWRNDNDQEARNKIAMSHMRLVISMAAKFRSFGLPMGDLVQEGHIGL 77

Query: 88  MKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILRNWRIVKVATTKAQRKLFFNLRSQKKRL 147
           ++A  RF P   VR  ++A  WI+A + +++LRNW IV+  T+ AQ+ LFFNLR  + RL
Sbjct: 78  LEAAARFEPSREVRFSTYATWWIRASMQDYVLRNWSIVRGGTSSAQKALFFNLRRLRARL 137

Query: 148 A----WLNNDEVH-RVAESLGVEPREVREMESRLSGQDMAFD-PAAEADDDSAFQSPAHY 201
           A     L +  +H  +A +LGV   +V+ M++RLSG D +   P    D D+   +   +
Sbjct: 138 AQGDRQLTSQAMHEEIAAALGVSLADVQTMDARLSGNDASLQAPIGSGDPDAG--ARLDF 195

Query: 202 LEDHRYDPAVQLEDADWSDNSTSNLHEALQGLDERSRDILYQRWLAEEKATLHELADKYS 261
           L      P  Q+ D    + +   L  AL  L ER   I+  R L E+ ATL EL     
Sbjct: 196 LASEAPLPDEQVSDLIDGERARRWLQVALGELSEREMKIIRARRLTEDGATLEELGVALG 255

Query: 262 VSAERIRQLEKNAMNKVKALIAA 284
           +S ER+RQ+E  A+ K++A + A
Sbjct: 256 ISKERVRQIETRALEKLRAALTA 278