Pairwise Alignments

Query, 284 a.a., RNA polymerase factor sigma-32 from Pseudomonas putida KT2440

Subject, 301 a.a., RNA polymerase factor sigma-32 from Sinorhizobium meliloti 1021

 Score =  181 bits (459), Expect = 2e-50
 Identities = 107/287 (37%), Positives = 163/287 (56%), Gaps = 8/287 (2%)

Query: 1   MTTSLQPAYALVPGANLEAYVHTVNSIPLLTVEQERDLGERLYYEQDVEAARQMVMAHLR 60
           M  +  P  A   G  L  Y+  +   P+L  ++E  L +R     D +AA ++V +HLR
Sbjct: 1   MARNTLPTIAAGEGG-LNRYLDEIRKFPMLEPQEEYMLAKRYQEHDDRKAAHKLVTSHLR 59

Query: 61  FVVHIARSYAGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILR 120
            V  IA  Y GYGL   ++I EGNVGLM+AVK+F P+ G RL ++A+ WIKA I E+ILR
Sbjct: 60  LVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKKFEPDRGFRLATYAMWWIKAAIQEYILR 119

Query: 121 NWRIVKVATTKAQRKLFFNLRSQKKRLAWLNN-----DEVHRVAESLGVEPREVREMESR 175
           +W +VK+ TT  Q++LFFNLR  K R+  L+      ++V  +A +L V   EV  M  R
Sbjct: 120 SWSLVKMGTTANQKRLFFNLRRLKGRIQALDEGDLKPEQVKEIATTLKVSEEEVVSMNRR 179

Query: 176 LSGQDMAFDPAAEADDDSAFQSPAHYLEDHRYDPAVQLEDADWSDNSTSNLHEALQGLDE 235
           LSG D + +   +A +  + Q     ++DH     + +E  D  ++  + L  A++ L++
Sbjct: 180 LSG-DASLNAPIKASEGDSGQWQDWLVDDHDNQEQILIEQ-DELESRRALLANAMKVLND 237

Query: 236 RSRDILYQRWLAEEKATLHELADKYSVSAERIRQLEKNAMNKVKALI 282
           R R I   R L EE  TL +L+ ++ +S ER+RQ+E  A  KV+  +
Sbjct: 238 RERRIFEARRLTEEPITLEDLSTEFDISRERVRQIEVRAFEKVQEAV 284