Pairwise Alignments

Query, 284 a.a., RNA polymerase factor sigma-32 from Pseudomonas putida KT2440

Subject, 696 a.a., Sigma 70 (RpoD) (NCBI) from Rhodospirillum rubrum S1H

 Score = 92.0 bits (227), Expect = 3e-23
 Identities = 70/235 (29%), Positives = 118/235 (50%), Gaps = 15/235 (6%)

Query: 50  AARQMVMAHLRFVVHIARSYAGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHW 109
           A ++M+ A+LR V+ IA+ Y   GL   DLIQEGN+GLMKAV +F    G +  ++A  W
Sbjct: 458 AKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 517

Query: 110 IKAEIHEFILRNWRIVKVATTKAQ--RKLFFNLRSQKKRLAWLNNDEV-HRVAESLGVEP 166
           I+  I   I    R +++     +   KL   +R+ ++ L  +  +     +AE L +  
Sbjct: 518 IRQAITRSIADQARTIRIPVHMIETINKL---VRTSRQMLHEIGREPTPEELAEKLQMPL 574

Query: 167 REVREMESRLSGQDMAFDPAAEADDDSAFQSPAHYLEDHRYDPAVQLEDADWSDNSTSNL 226
            +VR++  +++ + ++ +     ++DS       ++ED     AVQ  DA  + N     
Sbjct: 575 EKVRKV-LKIAKEPISLETPIGDEEDSHL---GDFIEDKN---AVQPLDAAINSNLRETC 627

Query: 227 HEALQGLDERSRDILYQRW--LAEEKATLHELADKYSVSAERIRQLEKNAMNKVK 279
              L  L  R   +L  R+        TL E+  ++SV+ ERIRQ+E  A+ K+K
Sbjct: 628 TRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 682