Pairwise Alignments

Query, 284 a.a., RNA polymerase factor sigma-32 from Pseudomonas putida KT2440

Subject, 306 a.a., Sigma 32 (RpoH) (NCBI) from Rhodospirillum rubrum S1H

 Score =  175 bits (444), Expect = 1e-48
 Identities = 110/289 (38%), Positives = 157/289 (54%), Gaps = 12/289 (4%)

Query: 1   MTTSLQPAYALVPGANLEAYVHTVNSIPLLTVEQERDLGERLYYEQDVEAARQMVMAHLR 60
           M+T      A+     L  Y+  +   P+LT E+E  L +RL  E D +AA ++V +HLR
Sbjct: 1   MSTYRYKLPAVSDEGGLSRYLTEIKRFPMLTPEEEFMLAKRLQDEGDRDAAHRLVTSHLR 60

Query: 61  FVVHIARSYAGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILR 120
            V  IA  Y  YGL  +DL+ EGN+GLMKAVK+F  + G RL ++A+ WIKA I+E+IL 
Sbjct: 61  LVAKIAMGYRHYGLPVSDLVAEGNMGLMKAVKKFEADRGFRLATYAMWWIKASINEYILN 120

Query: 121 NWRIVKVATTKAQRKLFFNLRSQKKRLAW-----LNNDEVHRVAESLGVEPREVREMESR 175
           +W +VKV T  AQ+KLFFNLR  K +L       L+ ++V  +A  L V   +V  M  R
Sbjct: 121 SWSLVKVGTVAAQKKLFFNLRRLKAKLGVYEEGDLSPEDVKTIATQLKVTEADVVMMNRR 180

Query: 176 LSGQDMAFDPAAEADDDSAFQSPAHYLEDHRYDPAVQLEDADWSDNSTSN--LHEALQGL 233
           L+G D + +      +D +       +++      V    A   + S  N  L +AL  L
Sbjct: 181 LAGPDASLN--VPVGEDQSMDRMDLLMDEGDNQEEVY---AAHEEQSLGNRLLKDALSTL 235

Query: 234 DERSRDILYQRWLAEEKATLHELADKYSVSAERIRQLEKNAMNKVKALI 282
            ER R I+  R L  E  TL EL  +Y VS ER+RQ+E  A  K++  +
Sbjct: 236 TERERHIITARRLRSEPVTLEELGGEYGVSRERVRQIENRAFEKLQTAV 284