Pairwise Alignments

Query, 284 a.a., RNA polymerase factor sigma-32 from Pseudomonas putida KT2440

Subject, 298 a.a., RNA polymerase sigma-32 factor RpoH from Phaeobacter inhibens DSM 17395

 Score =  210 bits (535), Expect = 3e-59
 Identities = 118/275 (42%), Positives = 163/275 (59%), Gaps = 6/275 (2%)

Query: 10  ALVPGANLEAYVHTVNSIPLLTVEQERDLGERLYYEQDVEAARQMVMAHLRFVVHIARSY 69
           A  P   L  Y+  +   PLL  E+E  L +R   EQD  +A +MV +HLR    IA  Y
Sbjct: 9   APTPEGGLNRYLQEIRKFPLLEPEEEYMLAKRWVEEQDSASAHKMVTSHLRLAAKIAMGY 68

Query: 70  AGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILRNWRIVKVAT 129
            GYGL QA++I E NVGLM+AVKRF+PE G RL ++A+ WI+A I E+ILR+W +VK+ T
Sbjct: 69  RGYGLPQAEVISEANVGLMQAVKRFDPEKGFRLATYAMWWIRASIQEYILRSWSLVKLGT 128

Query: 130 TKAQRKLFFNLRSQKKRLAWLNNDEVH-----RVAESLGVEPREVREMESRLSGQDMAFD 184
           T AQ+KLFFNLR  K R+  L   ++H     ++A  LGV   EV  M  R+SG D + +
Sbjct: 129 TSAQKKLFFNLRKAKARIGALEEGDLHPDSVKKIATDLGVTETEVISMNRRMSGGDASLN 188

Query: 185 PAAEADDDSAFQSPAHYLEDHRYDPAVQLEDADWSDNSTSNLHEALQGLDERSRDILYQR 244
               ++ +   Q    +LED   D A   E  D  +     L  AL+ L++R +DIL QR
Sbjct: 189 ATVGSEGEGTMQW-QDWLEDEDADQAGDYEARDELEARRELLASALEVLNDREKDILTQR 247

Query: 245 WLAEEKATLHELADKYSVSAERIRQLEKNAMNKVK 279
            LA++  TL +L+ +Y VS ERIRQ+E  A  K++
Sbjct: 248 RLADQAKTLEDLSTQYGVSRERIRQIEVRAFEKLQ 282