Pairwise Alignments

Query, 284 a.a., RNA polymerase factor sigma-32 from Pseudomonas putida KT2440

Subject, 285 a.a., alternative sigma factor RpoH from Dechlorosoma suillum PS

 Score =  288 bits (738), Expect = 7e-83
 Identities = 158/287 (55%), Positives = 201/287 (70%), Gaps = 5/287 (1%)

Query: 1   MTTSLQPAYALVPGA--NLEAYVHTVNSIPLLTVEQERDLGERLYYEQDVEAARQMVMAH 58
           MT +L  ++ L P A  NL+AY+      P+L+  +E  L  RL  E DV+AARQ+V++H
Sbjct: 1   MTQALTLSHGL-PSAVGNLDAYIQAARRFPMLSEAEEFALARRLREEDDVDAARQLVLSH 59

Query: 59  LRFVVHIARSYAGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFI 118
           LR V+ IAR Y GYGL  ADLIQEGN+GLMKAVKRF+P  GVRLVSFA+HWIKAEIHE+I
Sbjct: 60  LRLVIAIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPSRGVRLVSFAMHWIKAEIHEYI 119

Query: 119 LRNWRIVKVATTKAQRKLFFNLRSQKKRLAWLNNDEVHRVAESLGVEPREVREMESRLSG 178
           L+NWR+VKVATTKAQRKLFFNLRS K     L   EV  +A  LGV+  EV EME+R+ G
Sbjct: 120 LKNWRLVKVATTKAQRKLFFNLRSLKASSDTLTPAEVDEIAYKLGVKAEEVVEMETRMGG 179

Query: 179 QDMAFDPAAEADDDSAFQSPAHYLEDHRYDPAVQLEDADWSDNSTSNLHEALQGLDERSR 238
           +D+A D + + +DD+   +P  YL D   +P   LE  ++    +  L +AL GLDERSR
Sbjct: 180 RDLALDGSPDDEDDNRV-APIAYLADSAAEPTQVLEAREYDRLQSDGLQQALAGLDERSR 238

Query: 239 DILYQRWLAEEK-ATLHELADKYSVSAERIRQLEKNAMNKVKALIAA 284
            I+  RWL EE  ATLH+LA ++ VSAERIRQ+E  A+ K+K L+AA
Sbjct: 239 RIVEARWLDEENPATLHDLAAEFGVSAERIRQIEVKALQKMKGLLAA 285