Pairwise Alignments

Query, 284 a.a., RNA polymerase factor sigma-32 from Pseudomonas putida KT2440

Subject, 330 a.a., RNA polymerase sigma factor RpoS from Klebsiella michiganensis M5al

 Score =  104 bits (259), Expect = 3e-27
 Identities = 76/268 (28%), Positives = 139/268 (51%), Gaps = 12/268 (4%)

Query: 18  EAYVHTVNSIPLLTVEQERDLGERLYYEQDVEAARQMVMAHLRFVVHIARSYAGYGLAQA 77
           + Y+  +   PLLT E+E     R     DV + R+M+ ++LR VV IAR Y   GLA  
Sbjct: 59  QLYLGEIGYSPLLTAEEEVYFARRAL-RGDVASRRRMIESNLRLVVKIARRYGNRGLALL 117

Query: 78  DLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILRNWRIVKVATTKAQRKLF 137
           DLI+EGN+GL++AV++F+PE G R  ++A  WI+  I   I+   R +++      ++L 
Sbjct: 118 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRL-PIHIVKELN 176

Query: 138 FNLRSQKKRLAWLNND-EVHRVAESLGVEPREVREMESRLSGQDMAFDPAAEADDDSAFQ 196
             LR+ ++    L+++     +AE L     +V  M  RL+ +  + D     D + A  
Sbjct: 177 VYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRM-LRLNERITSVDTPLGGDSEKAL- 234

Query: 197 SPAHYLEDHRYDPAVQLEDADWSDNSTSNLHEALQGLDERSRDILYQRW--LAEEKATLH 254
                L D + +     ED    D+   ++ +    L+ + R++L +R+  L  E ATL 
Sbjct: 235 --LDILADEKDNGP---EDTTQDDDMKQSIVKWQFELNAKQREVLARRFGLLGYEAATLE 289

Query: 255 ELADKYSVSAERIRQLEKNAMNKVKALI 282
           ++  +  ++ ER+RQ++   + +++ ++
Sbjct: 290 DVGREIGLTRERVRQIQVEGLRRLREIL 317