Pairwise Alignments

Query, 817 a.a., penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase from Pseudomonas putida KT2440

Subject, 789 a.a., penicillin-binding protein 1B (RefSeq) from Shewanella loihica PV-4

 Score =  165 bits (417), Expect = 1e-44
 Identities = 91/246 (36%), Positives = 140/246 (56%), Gaps = 5/246 (2%)

Query: 74  EIPPQFIQALLSAEDDNFLNHYGVDPSSLMRAATQLVKTGHIQTGGSTITMQVAKNFFLT 133
           +IP   + AL+  ED +F  H+GV+P +++RAA   +  G    GGST+T Q+AKNFFL+
Sbjct: 201 KIPKAIVDALILVEDRSFYEHHGVNPFAIIRAAMVNISAGRTVQGGSTLTQQLAKNFFLS 260

Query: 134 SERSFSRKTNEILLALQIERELTKDEILELYVNKIYLG----NRAYGIDAAAQVYYGKSI 189
           SERS  RK  E L+A+ I+    KDEILE Y+N++Y+G       +G+  A+Q Y+G+ I
Sbjct: 261 SERSIIRKLREALMAIIIDFRYDKDEILEAYLNEVYMGQDKSRAVHGMGLASQFYFGRPI 320

Query: 190 RDVSLAQMAMIAGLPKAPSRFNPLANPVRAKERRDWILGRMYKLGKIDQASYEAALAEPL 249
            +++L Q A +    K PS +NP   P RA+ERRD +L  + + G++  A Y+AA+  PL
Sbjct: 321 AELTLPQQAFLVAAIKGPSYYNPWRFPERAQERRDLVLRLLMESGQLPVAQYKAAVESPL 380

Query: 250 NASYHVPTPEVNAPYIAEMARAEMVGRYGSDAYTE-GFRVTTTVPSDMQEMANKAVLKGL 308
                        P    + R E+  R+G     + G +V TT+    QE A +AV   +
Sbjct: 381 GVRKASKPVHQKLPAFFAVVRGELSRRFGDSLLQQSGIKVYTTLDPLAQEAAEQAVRSTM 440

Query: 309 SDYDER 314
            + ++R
Sbjct: 441 KNLEQR 446



 Score =  122 bits (307), Expect = 6e-32
 Identities = 101/350 (28%), Positives = 155/350 (44%), Gaps = 64/350 (18%)

Query: 423 QSALVTLDPNNGAIRALVGGFSFEQSNYNRAVQAKRQPGSSFKPFIYSAALDSG--YTAS 480
           Q  +V  D  +  I A+VG        +NRAV+ +R  GS  KPF+Y+ AL  G  YT +
Sbjct: 451 QVGMVVTDKYSAGIAAMVGDKVPSYQGFNRAVEIRRPIGSLIKPFVYATALTHGDKYTLA 510

Query: 481 SLVNDAPIVFVDESVDKVWRPKNDTNTFLGPIRMREALYKSRNLVSIRLLQAMGVDRTID 540
           + + D PI   + S  K W P+N    F G + +  A  KS N+ ++ L  A+G D    
Sbjct: 511 TPLKDEPITLTN-SQGKTWSPQNVNKQFSGEVPLMTAFKKSMNVPTVNLGMAIGTDAVAT 569

Query: 541 YIAKFGFNKQDLPRNLSLALGTATLTPMEIATGWSTFANGGYKITPYLIERIESRSGETL 600
            +AK G++ + +P   S+ LG    +P+ +A  + T A+ G                   
Sbjct: 570 TLAKSGWD-ETIPEYPSMLLGAVNGSPLMVAQVYQTLADNG------------------- 609

Query: 601 FTANPARVPQGAQDQAGLAAPEQPISTAAMPGEAPSAFSQVAAASQAPAVAEQIIDGRTT 660
                 R  Q       L A  QP+S                 ASQ    A+Q I   + 
Sbjct: 610 ------RYRQLNAVTHVLDADNQPLS-----------------ASQRG--ADQAISVASD 644

Query: 661 YILTSMLQDVIKRGTGRR-ALALGRTDLAGKTGTTNESKDAWFSGYNADYVTTVWVGFDQ 719
           +++   +  V++ GT  +   A     LAGKTGT+N+S+D+WF+G++   V  VWVG D 
Sbjct: 645 FLVQHAMTQVVQSGTATKLGQAFPGVTLAGKTGTSNDSRDSWFAGFDERNVAAVWVGLDD 704

Query: 720 PETLGRREYGGTAALPIWMNFMGAALKDKPAHAPAEPEGILSLRVDPVSG 769
                   YG + A+ ++  F+          AP      +SLR  PV+G
Sbjct: 705 NGKTSL--YGSSGAMAVYQAFL-------KQRAP------ISLRRTPVNG 739