Pairwise Alignments

Query, 412 a.a., type 4 pili biogenesis protein from Pseudomonas putida KT2440

Subject, 683 a.a., type IV pilus secretin PilQ (RefSeq) from Shewanella loihica PV-4

 Score =  315 bits (806), Expect = 3e-90
 Identities = 179/415 (43%), Positives = 253/415 (60%), Gaps = 23/415 (5%)

Query: 15  YQGEPLSLNFQDVEVRAVLQVLADYAGVNLVASDAVQGSVTLRLQDVPWDQALDLVLRSK 74
           Y+G  LSLNFQ + VR VLQ++ADY   NLV SD V+G +TLRL DVPWDQALDL+L++K
Sbjct: 268 YEGRSLSLNFQSISVRTVLQIIADYNNFNLVTSDTVEGDITLRLDDVPWDQALDLILQTK 327

Query: 75  GLSRRQEGNVLLVAPAAEFAAQSADARVSQALDAHLQPLRRELLPIHHAKAADLAQLLLA 134
           GL +R EGN+L+VAPA E A + +    +Q     L PL  E L I++AKA D+A+LL  
Sbjct: 328 GLDKRIEGNILMVAPAEEIAIRESQELKNQQEVKELAPLYSEYLQINYAKATDIAELLKG 387

Query: 135 GLEGDGIPPASLSVDERTNTLVVHLPADRLAEMRQLVAQLDVPVRQVAIEARIVEANVDY 194
                     +++VD+RTNTL+V    + L  + +LV  LD+P+RQV IE+R+V    D 
Sbjct: 388 DDASLLSARGTVAVDDRTNTLLVKDTEESLENIHRLVEVLDIPIRQVLIESRMVTVKDDV 447

Query: 195 EKSLGVRWG-----------GPLYGEK-----LRP--GKELFVDLGLERAGSS---IGLG 233
            + LG++WG           G L G       + P  G  L V+L    A  +     + 
Sbjct: 448 SEDLGIKWGITDQQGSKGTSGSLEGANDIANGVVPDIGDRLNVNLPAAVANPTSIAFHVA 507

Query: 234 LLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETSQSGATSVSF 293
            L    LLDLELSA+E+   GEII+ P++ T++++ A I +G E+PY E++ SGA +V F
Sbjct: 508 KLADGTLLDLELSALEQESKGEIIASPRITTSNQKAAYIEQGVEIPYVESASSGAATVQF 567

Query: 294 REASLSLEVTPQITPDNKVIMTVRVTKDEPDYV--NALNNVPPIRKNEVNAKVRVADGET 351
           ++A LSL VTPQITPDN+VI+ + +T+D         L     I    +  +V V  GET
Sbjct: 568 KKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPLGQAVSIDTQRIGTQVLVDHGET 627

Query: 352 IVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRIMSDQ 406
           IV+GG+Y     N V KVP  GD+P++G LFR    + ++ ELL+F+TP+I+S+Q
Sbjct: 628 IVLGGIYQQQLINRVSKVPVLGDIPFLGYLFRNTTDKNERQELLIFVTPKIISEQ 682