Pairwise Alignments

Query, 412 a.a., type 4 pili biogenesis protein from Pseudomonas putida KT2440

Subject, 660 a.a., type II secretion system protein GspD from Klebsiella michiganensis M5al

 Score =  104 bits (259), Expect = 9e-27
 Identities = 82/332 (24%), Positives = 147/332 (44%), Gaps = 45/332 (13%)

Query: 116 ELLPIHHAKAADLAQLLLA-----GLEGDGIPPAS-------LSVDERTNTLVVHLPADR 163
           +++ + +AKA+DL ++L         E     P +       +    +TN L+V    D 
Sbjct: 270 KVIYLKYAKASDLVEVLTGISSTMQSEKQAAKPVAALDKNIIIKAHGQTNALIVTAAPDV 329

Query: 164 LAEMRQLVAQLDVPVRQVAIEARIVEANVDYEKSLGVRWGGPLYGEKLRPGKELFVDLGL 223
           + ++ +++AQLD+   QV +EA I E       +LG++W     G        L +   +
Sbjct: 330 MNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAI 389

Query: 224 ERAG-------------------SSIGLGLLRGDVLLDLELSAMEKSGNGEIISQPKVVT 264
             A                    + I  G  +G+  +   L+A+  S   +I++ P +VT
Sbjct: 390 AGANQYNKDGTVSSSLASALSSFNGIAAGFYQGNWAM--LLTALSSSTKNDILATPSIVT 447

Query: 265 ADKETARILKGTEVPYQETSQSGA-----TSVSFREASLSLEVTPQITPDNKVIMTVRVT 319
            D   A    G EVP    SQ+ +      +V  +   + L+V PQI   + V++ +   
Sbjct: 448 LDNMEATFNVGQEVPVLTGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIE-- 505

Query: 320 KDEPDYVNALNNVPP-----IRKNEVNAKVRVADGETIVIGGVYSTSQNNVVDKVPFFGD 374
           ++     +A ++             VN  V V  GET+V+GG+   S ++  DKVP  GD
Sbjct: 506 QEVSSVADAASSTSSDLGATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGD 565

Query: 375 LPYVGRLFRRDALQEKKSELLVFLTPRIMSDQ 406
           +P +G LFR  + +  K  L++F+ P ++ D+
Sbjct: 566 IPVIGALFRSTSKKVSKRNLMLFIRPTVIRDR 597



 Score = 31.6 bits (70), Expect = 7e-05
 Identities = 37/177 (20%), Positives = 75/177 (42%), Gaps = 6/177 (3%)

Query: 3   TLLSIPLASATPYQGEPLSLNFQDVEVRAVLQVLADYAGVNLVASDAVQGSVTLR----L 58
           TLL        P   E  S +F+  +++  +  ++      ++   +V+G++T+R    L
Sbjct: 13  TLLIFAALLFRPAAAEEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVRGTITVRSYDML 72

Query: 59  QDVPWDQALDLVLRSKGLSRRQEGNVLLVAPAAEFAAQSADARVSQALDAHLQPLRRELL 118
            +  + Q    VL   G +     N +L    ++ A  +A    S A       +   ++
Sbjct: 73  NEEQYYQFFLSVLDVYGFAVINMNNGVLKVVRSKDAKTAAVPVASDAAPGIGDEVVTRVV 132

Query: 119 PIHHAKAADLAQLLLAGLEGDGIPPASLSVDERTNTLVVHLPADRLAEMRQLVAQLD 175
           P+ +  A DLA LL    +  G+   S+   E +N L++   A  +  +  +V ++D
Sbjct: 133 PLTNVAARDLAPLLRQLNDNAGV--GSVVHYEPSNVLLMTGRAAVIKRLLTIVERVD 187



 Score = 25.8 bits (55), Expect = 0.004
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 13/88 (14%)

Query: 118 LPIHHAKAADLAQLLL--------AGLEGDGIPPASLSVDERTNTLVVHLPADRLAEMRQ 169
           +P+  A AAD+ +L+         + L G  +  A++  DERTN ++V    +    +  
Sbjct: 197 VPLSWASAADVVKLVTELNKDTSKSALPGSMV--ANVVADERTNAVLVSGEPNSRQRIIA 254

Query: 170 LVAQLDVPVRQVAIEARIVEANVDYEKS 197
           ++ QLD   RQ A +       + Y K+
Sbjct: 255 MIKQLD---RQQATQGNTKVIYLKYAKA 279