Pairwise Alignments

Query, 412 a.a., type 4 pili biogenesis protein from Pseudomonas putida KT2440

Subject, 624 a.a., type III secretion system protein, YscC family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  111 bits (277), Expect = 7e-29
 Identities = 76/283 (26%), Positives = 133/283 (46%), Gaps = 29/283 (10%)

Query: 145 SLSVDERTNTLVVHLPADRLAEMRQLVAQLDVPVRQVAIEARIVEANVDYEKSLGV---- 200
           S+  D R N ++VH    R+     ++  LD PV  V I A IV+ + ++++ LGV    
Sbjct: 259 SIMADPRVNAVIVHDAVYRMPYYESVIGDLDRPVELVEIHAAIVDIDTNFKRDLGVTYQA 318

Query: 201 ------RWGGPLYGEKLRPGKELFVDLGLERAGSSIGLGL-----LRGDVLLDLELSAME 249
                 RW G   G  +  G + F  L +       GL L     +  D  L   ++A+E
Sbjct: 319 TVGKDQRWAG---GADVSTGTDKFTPLPVPGVPQGSGLTLSTIYTMGSDYFL-ARINALE 374

Query: 250 KSGNGEIISQPKVVTADKETARILKGTEVPYQETSQSGATSVSFREASLSLEVTPQITPD 309
           K+G   ++ +P V+T D   A  L+ T   Y +     A  +   EA   L VTP I  +
Sbjct: 375 KNGEARMLGRPSVLTVDNVQAT-LENTSTYYIQVQGYQAVDLFKVEAGTVLRVTPHIINN 433

Query: 310 NK----VIMTVRVTKDE-----PDYVNALNNVPPIRKNEVNAKVRVADGETIVIGGVYST 360
           +     + + V V  D+     P   +    +PPI++ ++N +  +  G++++IGG Y  
Sbjct: 434 DDGTDAIKLVVSVQDDQNNQTTPTSTSTTQAIPPIKQTKINTQAIIGAGQSLLIGGYYYE 493

Query: 361 SQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRIM 403
            +    D VP   ++P +G LF+  + + K+ E L+ +TP+++
Sbjct: 494 QKATSADGVPILMNIPVLGNLFKTQSKENKRMERLILITPKVV 536