Pairwise Alignments

Query, 478 a.a., two-component system DNA-binding transcriptional dual regulator GlnL/GlnG from Pseudomonas putida KT2440

Subject, 446 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  288 bits (737), Expect = 3e-82
 Identities = 173/464 (37%), Positives = 258/464 (55%), Gaps = 39/464 (8%)

Query: 7   VWIVDDDRSIRWVLEKALQQEGMTTQSFDSAD-GVMGRLARQQPDVIISDIRMPGTSGLD 65
           V+++DD+  IR  L ++ +   +  Q F S +  ++   A+  P VI+SDI +PG SG +
Sbjct: 4   VFLIDDESDIRIALAQSFELADLNAQFFASVEEALLAIKAQGLPLVIVSDICLPGLSGQN 63

Query: 66  LLAQIREQHPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKPFDVDEAVSLVKRANQ---- 121
           LL+ +  Q   LPVI++T H D+  AV +   GA++++ KPF  +  +  V RA +    
Sbjct: 64  LLSSVLHQDSELPVILITGHGDISMAVKAMHDGAYDFIEKPFAPERLIDTVHRAIEKRRL 123

Query: 122 ---HAQEQQGLDVPQNLARTPEIIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKELV 178
              + Q ++ L V Q L   P IIGE  A+Q +   I +++ +   +L+ GE+GTGKELV
Sbjct: 124 TLENRQLKRSLKVSQTLG--PRIIGETAAIQTLRDTIAQVADTQADILLFGETGTGKELV 181

Query: 179 AHALHRHSPRAASPFIALNMAAIPKDLMESELFGHEKGAFTGAANLRRGRFEQADGGTLF 238
           A +LH  S R    F+A+N  A+P++L+ESEL+GHEKGAFTGA + R G+FE A GGTLF
Sbjct: 182 ARSLHEQSSRREQNFVAINCGAVPENLIESELYGHEKGAFTGADSRRVGKFEHAQGGTLF 241

Query: 239 LDEIGDMPADTQTRLLRVLADGEFYRVGGHVPVKVDVRIIAATHQNLESLVQAGKFREDL 298
           LDEI  MP   Q RLLRVL +    R+G +  + +D+R+IAAT  +L+     GKFR+DL
Sbjct: 242 LDEIESMPMQAQIRLLRVLQERVIERIGSNELIPLDIRVIAATKIDLKQAAAEGKFRQDL 301

Query: 299 FHRLNVIRIHIPRLADRREDIPALARHFLARAAQELAVEPKILKPETEEFIRNLPWPGNV 358
           ++RLN++ + IP L +RREDIPAL  HFL  AA         L     + + +  WPGNV
Sbjct: 302 YYRLNIVTLTIPPLRERREDIPALFHHFLLVAAARYGKAATALTASDVQSLLSHDWPGNV 361

Query: 359 RQMENTCRWITVMASSREVLIGDLPPELLNLPHDAAPVTNWEQALRQWADQALARGQTSL 418
           R++ N        A+ R VL+G                      L Q+A+    + +   
Sbjct: 362 RELRN--------AAERYVLLG---------------------KLAQFAESHEPKSKLLG 392

Query: 419 LDSAVPSFERIMIETALKHTAGRRRDAALLLGWGRNTLTRKIKE 462
           L+  V  FE+ ++E  L    G  +     L   R TL  K+++
Sbjct: 393 LNEQVAEFEKSLLEQTLIECGGSIKATMERLHLPRKTLYDKMQK 436