Pairwise Alignments

Query, 235 a.a., Ribosomal RNA small subunit methyltransferase E from Pseudomonas putida KT2440

Subject, 243 a.a., hypothetical protein from Synechococcus elongatus PCC 7942

 Score = 48.9 bits (115), Expect = 9e-11
 Identities = 60/217 (27%), Positives = 93/217 (42%), Gaps = 13/217 (5%)

Query: 20  ADRRFTHMQEIHRVAVGDNLRVGRINGLMGRATVLRLEKHEAELEVAFDQQPPAKLPLTL 79
           AD+R  ++Q + R+  GD   V  I+G  G  T    ++ +     A    PPA+  LTL
Sbjct: 24  ADQRH-YLQRVLRLKPGDRCAV--IDGQGGLWTAELGDRDQLFPVGAVPVLPPAQPRLTL 80

Query: 80  VLAVPRPKMLRRLFQTVATLGVPRLILLNSYKVEKSFWQTPFLQPDTIRENLILGLEQAR 139
           + ++P+ +    + +    LGV  +  + S   ++S  +    + D  R+  I   EQ+ 
Sbjct: 81  IQSLPK-QGFDEVIRQATELGVTTIQPVIS---DRSQVRPEAQKTDRWRKIAIEASEQSE 136

Query: 140 DTVLPEV----IIEKRFKPFVEDRLPTIAAGTLGLVGHPGPYPACPRAVEQAVTLAIGPE 195
              LP++    +  +       D L  I      L        A P   + A+  AIGPE
Sbjct: 137 RLYLPQLEPIRLWSEAIAQIPADSLRCICLARRSLPNLLPWLQAQPAWTDLAI--AIGPE 194

Query: 196 GGWIPYEVDLLGKAGLAPVQLGDRILRVETAVTALLS 232
           GGW   E++     G  PV LG  ILR  TA    LS
Sbjct: 195 GGWSDAEIEQAIAVGWTPVSLGSSILRAVTAPIVALS 231