Pairwise Alignments

Query, 1646 a.a., signal transduction histidine kinase CheA/CheY-like receiver from Pseudomonas putida KT2440

Subject, 920 a.a., chemotaxis protein CheA from Methanococcus maripaludis S2

 Score =  211 bits (536), Expect = 4e-58
 Identities = 124/367 (33%), Positives = 205/367 (55%), Gaps = 16/367 (4%)

Query: 1129 LSRALFESASDLLDLKETLAQRAQEAYSLLQQQARVNSQLQEGLTATLMVPFERLVPRLQ 1188
            ++RA F   +   DLKE         ++ + +   + ++LQE +    M+P   +  R  
Sbjct: 565  INRANFTQIATKYDLKEL--------HNAVGRLNMLATELQEEVMGMRMIPVAFVFNRFP 616

Query: 1189 RVVRQVASELGKQVELVVGNAEGELDRSVLERMVAPLEHMLRNAVDHGLESRAMRLAAGK 1248
            R VR  A  L K+++  +  ++ ELDR+VL+ +  PL H++RN++DHG+E    R+  GK
Sbjct: 617  RTVRDTAKALDKEIDFEIEGSDIELDRTVLDELAEPLTHLIRNSLDHGIEHADERIKLGK 676

Query: 1249 PEQGTIHLNLLHEGADIVIEMTDDGAGVPLEAVRRKAIKRGLLDPQ--AQLSDHEILQFI 1306
            PE+G + L    +   + I + DDG G+  EA+R+KA ++GL   +   +L+D+E +  I
Sbjct: 677  PEKGILKLIATRQRDRVNIIIRDDGKGIDPEAMRKKAFEKGLYSKEEAEKLTDNEAVNVI 736

Query: 1307 LRPGFSTAEKITQISGRGLGMDVVHEEVKQLGGSMSIESAQGKGARFLIRLPFTVSINRA 1366
              PGFSTAE ++ +SGRG+GMDVV  +++ LGGS+++ S  GKG    + LP T++I + 
Sbjct: 737  FHPGFSTAEVVSDVSGRGVGMDVVRSKIESLGGSVTVNSEVGKGTEITLHLPLTMAIIQT 796

Query: 1367 LMVHLGEEQYAIPLNTIEGIVRVPPAELAACYQLDSPRYVYAGHEYELRYLGELLQGLPR 1426
            L++ L E  YA+PL ++  ++ V   ++      ++   +Y  H   + +L + L     
Sbjct: 797  LLIRLNEHIYALPLTSVLDVISVEKEQIKNLEGQEA--IIYRNHILPVIWLKDAL----N 850

Query: 1427 PALLGQSVPLPVLLVHSKEQSFAIQADSLSPSREIVVKSLGPQFAAVAGLSGATLLGDGR 1486
             +    S  L V++V   +    +  D +    EIVVK L      + GL+GAT+LGDGR
Sbjct: 851  TSGFSDSDDLYVVVVEKNKGKVGMILDEVIGRDEIVVKPLTGILKNINGLAGATILGDGR 910

Query: 1487 VVLILDL 1493
            V LILDL
Sbjct: 911  VALILDL 917



 Score = 50.4 bits (119), Expect = 9e-10
 Identities = 69/313 (22%), Positives = 125/313 (39%), Gaps = 56/313 (17%)

Query: 888  EELLEVFLEESSDIVESAAAALARWQADPRSSVEVDNLM-RDLHTLKGVARMVEITPIGD 946
            E+  E+F+ E+ + ++S    +   +  P  S  + N++ R  HTLKG AR +    I  
Sbjct: 5    EQYKELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHISS 64

Query: 947  LAHELEFLYELLAAGRLPPSAPLFALLQNCHDRLAHMLDAVRLGQPLHA--ATALIDYIR 1004
            L H +E + + +  G++  +  +  LL  C D L  M+  V  G+   +    +L++ I+
Sbjct: 65   LTHHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVDVDSLVEVIK 124

Query: 1005 NFSSAALT------DSAAGQGPPEAATAEIPAAAPERAPGDMVKVDAELLDDLGNLAGEH 1058
            +     L+      DS     P E A  ++          +   +         +L  E 
Sbjct: 125  SVKEKYLSGENSKEDSLDYSDPNEVAKKQVEEKTVNNISSNSGSI---------HLVNES 175

Query: 1059 SIIRGRIEQQVNDAQFALNE-METTLERMRDQ----LLRLDVETQGRISSRQQFEGDAYD 1113
            SII   IE Q N++     E +++ L +M +     L  LD    G +            
Sbjct: 176  SII--LIEGQSNNSVVEKPENLDSVLNQMHESASALLTILDALEYGELK----------- 222

Query: 1114 DFDPLEMDRHSQLQQLSRALFESASDLLDLKETLAQRAQEAYSLLQQQARV--------- 1164
                   D    + +LS A+    ++ + + E      + A S +QQ A+V         
Sbjct: 223  -------DTVKNIDELSNAML---NETVAITENSLSVLKSALSTMQQIAKVVETGSRAKC 272

Query: 1165 -NSQLQEGLTATL 1176
              S+L E ++ TL
Sbjct: 273  DYSELNEKISLTL 285



 Score = 44.3 bits (103), Expect = 7e-08
 Identities = 28/124 (22%), Positives = 64/124 (51%), Gaps = 1/124 (0%)

Query: 439 DELRQVFLDEAGELLPEIERHWLRWRADNQQREAL-GEVRRALHTLKGSGRMVHAEAVAE 497
           ++ +++F+ EA E L  + ++ +      +  E +   + R+ HTLKGS R +  E ++ 
Sbjct: 5   EQYKELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHISS 64

Query: 498 LAWGAEHLLNRVLEGRSVLSPEGVVALQQVFVHLPDLLADFAAGQLPQLTEIEQLAGHLH 557
           L    E +L+ + +G+  ++PE V  L +    L  ++++ + G+     +++ L   + 
Sbjct: 65  LTHHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVDVDSLVEVIK 124

Query: 558 SLAE 561
           S+ E
Sbjct: 125 SVKE 128



 Score = 31.2 bits (69), Expect = 6e-04
 Identities = 45/238 (18%), Positives = 99/238 (41%), Gaps = 27/238 (11%)

Query: 580 IFRSEAQGHLASLE---VYLQSTGGHDTPVSDDLQRALHTLKGSAAMAGVMPVAELATAF 636
           +F +EA+ HL SL    V L++       + + + R+ HTLKGSA   G   ++ L    
Sbjct: 10  LFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHISSLTHHM 69

Query: 637 DRLAREYKGHQLPLQMAEMEWLEAARSLFHLGLAQLDSTPLAAIPGAAELIEQVGQAVDR 696
           + +    +  ++ +    ++ L          ++++             L+E +    ++
Sbjct: 70  EDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVDVDSLVEVIKSVKEK 129

Query: 697 RLASL--------HEDPHHAGRSKRDPQLVASFLAHAMDILLDAETLLSRWQQQPG---- 744
            L+          + DP+   + + + + V +  +++  I L  E+ +   + Q      
Sbjct: 130 YLSGENSKEDSLDYSDPNEVAKKQVEEKTVNNISSNSGSIHLVNESSIILIEGQSNNSVV 189

Query: 745 -QRDALDNLLDQM-------TTLGHAAHLADL----WQMDDVCEALLDLYGAVEEGSL 790
            + + LD++L+QM        T+  A    +L      +D++  A+L+   A+ E SL
Sbjct: 190 EKPENLDSVLNQMHESASALLTILDALEYGELKDTVKNIDELSNAMLNETVAITENSL 247