Pairwise Alignments

Query, 239 a.a., 16S rRNA m3U1498 methyltransferase from Pseudomonas putida KT2440

Subject, 243 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Vibrio cholerae E7946 ATCC 55056

 Score =  203 bits (516), Expect = 3e-57
 Identities = 110/241 (45%), Positives = 154/241 (63%), Gaps = 3/241 (1%)

Query: 1   MRLSRFFIDAPL-SLGEHDLPEAQAHYIGRVLRMAPGDAVQLFDGSGQEYRGQLLEVGKK 59
           MR+ R +   P+  LG   L E  A +IGRVLRM  G  V LFDG G E+   + EVGKK
Sbjct: 1   MRIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKK 60

Query: 60  TVRVSLDQAFAGQADSPLHVHLGQGLSRGERMDWAIQKATELGANEITPIVSERCEVRLK 119
            V V++ +      +SPL +HLGQ +SRG++M++ IQK+ ELG   ITP++SERC V+L 
Sbjct: 61  QVLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLD 120

Query: 120 DERADKRLAHWRQVAISACEQCGRSTLPVIHPPVTLAEWLSSTKADLKLVLHPVAE-PLI 178
           ++R +K++  W+++AISACEQCGR+T+P I P + L  W +     LKL LHP A+  L 
Sbjct: 121 EKRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSLN 180

Query: 179 SHEKPAT-LAFVIGPEGGLSEAEVEQAKAAGFHAARLGPRVLRTETAPVVALSVAQQLWG 237
           +   P + +  +IGPEGGLS  E++  +   F    LGPRVLRTETA + A++  Q  +G
Sbjct: 181 TLPTPVSKVRLLIGPEGGLSAEEIDMTRRYQFEETLLGPRVLRTETAALTAIAALQVRFG 240

Query: 238 D 238
           D
Sbjct: 241 D 241