Pairwise Alignments

Query, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 605 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  842 bits (2174), Expect = 0.0
 Identities = 451/629 (71%), Positives = 496/629 (78%), Gaps = 33/629 (5%)

Query: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           MSFASLGLSEAL  A+EAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALP+L
Sbjct: 1   MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60

Query: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120
           E LFP GHPD+  R+GP+QPRVLVLTPTRELAAQVH+SFKVYARDLPL S CIFGGVGMN
Sbjct: 61  ELLFPGGHPDREHRYGPKQPRVLVLTPTRELAAQVHESFKVYARDLPLKSTCIFGGVGMN 120

Query: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180
           PQIQA+AKG+DVLVACPGRLLDLA Q  +DL+HVEILVLDEADRMLDMGFIHDVKKVLA+
Sbjct: 121 PQIQAVAKGLDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180

Query: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL 240
           LPAKRQNLLFSATFSKDITDLA KLLHNPERIEVTPPNTTVERIEQR++R+ ASHKRALL
Sbjct: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRMFRVAASHKRALL 240

Query: 241 AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV 300
           AHLIT GAWEQVLVFTRTKHGANRLAEYLEK GL AAAIHGNKSQNARTKALADFKAN V
Sbjct: 241 AHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKANQV 300

Query: 301 RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           R+LVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
Sbjct: 301 RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 361 LKSIERVTKQRIADGDLMGFDASQVEAEKPEARERPQNNGRGGRNQQARGEGGKDTNGGR 420
           LK IER+TKQRI +GDLMGFDAS +EAEKPE RE  Q   + G   +ARGE  K    G 
Sbjct: 361 LKGIERMTKQRIPEGDLMGFDASAIEAEKPEVREPRQPRPQRGEG-KARGERNKPAEKGA 419

Query: 421 KDKGKDKGKARQQAAAKPDDKEKSGDKQQPRKPRDKKSRPQQASNNSVPKPPADRDPEEF 480
           +   K++ +  Q  + KP     SG+ Q   +P               P+ P DR P+EF
Sbjct: 420 EQ--KERNRRSQSKSRKPARDSASGEAQVVARP---------------PQLPPDRAPDEF 462

Query: 481 LDDELDNFGNRADYVSPYQGKNQGRNRRPGGAGQGQGQGNGQRSNAGGQGQARNGGQPRS 540
            DDELDNFGNR DYVSPYQ K Q R RRPG   Q    G+  R+    +  A   G P +
Sbjct: 463 RDDELDNFGNRVDYVSPYQNK-QNRGRRPGAPAQ---PGSAPRAAGAARTGAAGAGAPAA 518

Query: 541 GGGEKRPPRANNGGGARRDGGGGRGRPARDDAARQ--EPAVRN---PRQPEKQPVIIRKE 595
            G  KRP +A       R G    G+P R + +R+  EP V      +  EKQPVII KE
Sbjct: 519 KG--KRPGQAQGA----RSGQPRNGQPRRKNESRRIDEPVVSRQEAAKPREKQPVIIHKE 572

Query: 596 SKLDRFPTPEQLDDLPSRPRGERPALLTR 624
           SK+DR P+ +QL+ LP+RPRGE+PALLTR
Sbjct: 573 SKIDRLPSLDQLEQLPTRPRGEKPALLTR 601