Pairwise Alignments

Query, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 556 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  306 bits (785), Expect = 1e-87
 Identities = 161/376 (42%), Positives = 236/376 (62%), Gaps = 11/376 (2%)

Query: 3   FASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62
           FA+LG+  A++ AI A GY +P+P+Q +AIP +L G D++  AQTGTGKT  FALPIL +
Sbjct: 8   FAALGIHSAVLAAISAVGYEEPSPIQSQAIPVILGGHDMIGQAQTGTGKTAAFALPILSK 67

Query: 63  LFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLP-LVSACIFGGVGMNP 121
           + PA           ++ + L+L PTRELA QV  +F+ Y++ +P L    ++GG  M P
Sbjct: 68  IDPAR----------KEVQALILAPTRELALQVATAFETYSKQMPGLTVVAVYGGAPMGP 117

Query: 122 QIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARL 181
           Q++AI +G  V+VA PGRL+D   +    L+ +  LVLDEAD ML +GF+ D++ +   +
Sbjct: 118 QLKAIRQGAQVIVATPGRLVDHLSRNSGLLSTIRFLVLDEADEMLKLGFMDDLEVIFEAM 177

Query: 182 PAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLA 241
           P  RQ +LFSAT    I  +A+K L  P+ I++     TV RIEQ    + A  K   + 
Sbjct: 178 PESRQTVLFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVL 237

Query: 242 HLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSVR 301
            L+ +  ++ ++ F RTK     LA  LE +G  AAA++G+ +QN R + +   K   + 
Sbjct: 238 RLLEVEDFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLD 297

Query: 302 VLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLL 361
           ++VATD+AARGLD+ ++ HV N ++P   E YVHRIGRTGRAGR G A+ LV P E ++L
Sbjct: 298 IVVATDVAARGLDVARITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRML 357

Query: 362 KSIERVTKQRIADGDL 377
           + IERVT Q++A+  L
Sbjct: 358 QVIERVTNQKVAEARL 373