Pairwise Alignments

Query, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  337 bits (864), Expect = 6e-97
 Identities = 182/379 (48%), Positives = 242/379 (63%), Gaps = 10/379 (2%)

Query: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           MSF+ LGLS+ LV+ +   GY +PT +Q +AIP +LQGRDL+ AAQTGTGKT  F LPIL
Sbjct: 1   MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60

Query: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120
           E+L       + Q    ++ R L+L PTRELA QV +  + Y +D  L S  +FGGV   
Sbjct: 61  EKL------RQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQ 114

Query: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180
            Q Q +  GVDVLVA PGRL+DL GQ  V    +E++VLDEADRMLDMGFI  + K++  
Sbjct: 115 AQKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDC 174

Query: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL 240
           LP++ Q LLFSAT S+ + +LA   + +P  I +     +   I Q +  +    K ALL
Sbjct: 175 LPSEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALL 234

Query: 241 AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV 300
           +HLI    W+Q L+F  TKHGA +L   LEK+G+ A A H  +SQ  R + L DFK+  +
Sbjct: 235 SHLINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKI 294

Query: 301 RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           + LVAT +AARG+DIDQL  VVN++LP   ++YVHRIGRTGRA   GEAIS V+ D  K 
Sbjct: 295 KYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKN 354

Query: 361 LKSIE----RVTKQRIADG 375
           L  IE     + ++R+ +G
Sbjct: 355 LCMIESRLGHLIERRVVEG 373