Pairwise Alignments

Query, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 499 a.a., ATP-dependent RNA helicase from Sinorhizobium meliloti 1021

 Score =  316 bits (810), Expect = 1e-90
 Identities = 193/476 (40%), Positives = 273/476 (57%), Gaps = 26/476 (5%)

Query: 2   SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
           +FA LGLS+ ++ A+  AGYT PTP+Q  AIP  LQ RD++  AQTGTGKT  F LP+L 
Sbjct: 3   NFADLGLSQKVLSAVTDAGYTIPTPIQVGAIPPALQRRDILGIAQTGTGKTASFVLPMLT 62

Query: 62  RLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMNP 121
            L       +  R   R PR L+L PTRELAAQV ++F  Y ++  L  A + GGV  + 
Sbjct: 63  LL-------EKGRARARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDE 115

Query: 122 QIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARL 181
           Q + + +G DVL+  PGRLLD   +GK+ +  VEILV+DEADRMLDMGFI D++++   +
Sbjct: 116 QDRKLERGADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLI 175

Query: 182 PAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPAS--HKRAL 239
           P  RQ L FSAT   +I  LAD+ L NPER+EV   ++T   + QR          KRA+
Sbjct: 176 PFTRQTLFFSATMPPEIQKLADRFLQNPERLEVARRSSTAITVTQRFVAAHGKDYEKRAV 235

Query: 240 LAHLI-TLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKAN 298
           L  LI +    +  ++F   K     L   L++ G +  A+HG+  Q +R   LA+FK  
Sbjct: 236 LRELIRSQEDLKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFKDG 295

Query: 299 SVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEE 358
           ++++LVA+D+AARGLDI  + HV NF++P   EDYVHRIGRTGRAGRSG A ++V   E 
Sbjct: 296 NIKLLVASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGAAFTIVTKRET 355

Query: 359 KLLKSIERVTKQRIA--DGDLMGFDASQVEAEKPEARERPQNNGRGGRNQQARGEGGKDT 416
           K   +IE++  Q++   +GDL          E  E+ +  ++ G  GR  + R   GK  
Sbjct: 356 KFSDAIEKLIGQKVEWFNGDLSEL------PEPMESHDSRRDRGSDGRKDRKRERPGK-V 408

Query: 417 NGGRKDKGKDKGKARQQAAAKPD-----DKEKSGDKQQPRKPR-DKKSRPQQASNN 466
           +  RK      G   ++    P+       E++ D +     R D+  R Q A+N+
Sbjct: 409 HADRKPV-TASGNNTEELETVPERVDAVKIERNADSKDRHNGRSDRPGRAQNAAND 463