Pairwise Alignments

Query, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 503 a.a., ATP-dependent RNA helicase from Sinorhizobium meliloti 1021

 Score =  379 bits (974), Expect = e-109
 Identities = 228/536 (42%), Positives = 313/536 (58%), Gaps = 39/536 (7%)

Query: 2   SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
           +F  LGLSE +V  + A G+ +PTP+Q +AIP VL+  DL+  AQTGTGKT  F LP++E
Sbjct: 3   TFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIE 62

Query: 62  RLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMNP 121
           +L   G     +R  PR  R LVL PTREL  Q+  + K++ +  PL    + GGV +N 
Sbjct: 63  KLVADG-----RRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINK 117

Query: 122 QIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARL 181
           Q + +A+GVD+LVA PGRLLDL  +  V L     LVLDEAD+MLD+GFIHD++K+   +
Sbjct: 118 QTEQLARGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLV 177

Query: 182 PAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASH-KRALL 240
           P  RQ LLFSAT  K I +LA + L +P ++EV+PP    +++EQ V+ +P    K  +L
Sbjct: 178 PKNRQTLLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTIL 237

Query: 241 AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV 300
              +T       L+F+RTKHGA +L ++L+  G  AA+IHGNKSQ  R +AL  F+   +
Sbjct: 238 KQTLTANPDGLSLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEI 297

Query: 301 RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           RVLVATD+AARG+DI  + HV N++LP V + YVHRIGRT R GR G AI+  APDE +L
Sbjct: 298 RVLVATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRL 357

Query: 361 LKSIERVTKQRIADGDLMGFDASQVEAEKPEARERPQNNGRGGR-NQQARGEGGKDTNG- 418
           L+ IE+          LMG   +    E P  + RP + GRGGR N Q RG G    NG 
Sbjct: 358 LRDIEK----------LMGIQIAVASGEAPADQARP-SKGRGGRGNGQPRGNGQPRGNGA 406

Query: 419 GRKDKGKDKGKARQQAAAKPDDKEKSGDKQQPRKPRDKKSRPQQASNNSVPKPPADRDPE 478
           G++  G  + + ++QAAA       +GD +  R  R  + R Q+A+ +     PAD  PE
Sbjct: 407 GQRQGGPRRDRPQRQAAA----GGFAGD-ELLRDERSHERRDQRAAGHG----PADGRPE 457

Query: 479 EFLDDELDNFGNRADYVSPYQGKNQGRNRRPGGAGQGQGQGNGQR-SNAGGQGQAR 533
                     G+R      + G+   +  R G    G+  G G R   A G+G  R
Sbjct: 458 ----------GHRNHKAQKHHGRPGPQQARRGSEQSGERNGGGNRPQRADGRGHQR 503