Pairwise Alignments

Query, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 432 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  323 bits (829), Expect = 7e-93
 Identities = 172/383 (44%), Positives = 241/383 (62%), Gaps = 5/383 (1%)

Query: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           M F S   +  +++A+   GY   TP+Q+ AIP V +G+D++ +AQTGTGKT  FALPIL
Sbjct: 1   MKFESYSFAPEILQALAECGYETMTPIQRLAIPPVRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120
           ++L      D  +     + R L+L PTREL  Q+ ++ K YA+ L L    +FGG   +
Sbjct: 61  QKLL-----DTPKAREATKARALILAPTRELTEQIANNIKAYAKHLELAVTTVFGGGKTD 115

Query: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180
            Q Q + KG D++VA PGRLL+    G + LA VE LVLDEADRMLDMGFI D++K++  
Sbjct: 116 VQAQKLRKGTDIIVATPGRLLEHLLAGNLSLAAVEFLVLDEADRMLDMGFIADIQKLIQA 175

Query: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL 240
              +RQ L+FSATFS  +  LAD+++     +     NT    + Q VY +    KR LL
Sbjct: 176 CNKERQTLMFSATFSGGVRKLADEIMKKHTVLTADRHNTAATTVSQVVYPVEQRRKRELL 235

Query: 241 AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV 300
           + LI    W++VLVF+ T+    +L E L   G+ +A IH  K+Q  R +AL DF    +
Sbjct: 236 SELIGRKNWQRVLVFSATREDCEKLTEELNLDGIPSAVIHSEKAQGTRRRALKDFTEGKI 295

Query: 301 RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           RVLV+T++AARGLDI  L +VVNF+LP + EDYVHR+GRTGRAG+SG AIS V+ +EE+ 
Sbjct: 296 RVLVSTEVAARGLDIPDLEYVVNFDLPFLPEDYVHRVGRTGRAGKSGVAISFVSREEERT 355

Query: 361 LKSIERVTKQRIADGDLMGFDAS 383
           L  IE++  QR+    + G++ S
Sbjct: 356 LADIEKLIGQRLKRIVMPGYEVS 378