Pairwise Alignments

Query, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 393 a.a., DEAD/DEAH box helicase (NCBI) from Rhodospirillum rubrum S1H

 Score =  352 bits (903), Expect = e-101
 Identities = 193/372 (51%), Positives = 248/372 (66%), Gaps = 7/372 (1%)

Query: 3   FASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62
           FASL L E L RA+ A GYT  TP+Q  AIP  L GRD++  AQTGTGKT  F LP+L+R
Sbjct: 4   FASLDLIEPLARAVTALGYTVATPIQAGAIPPQLLGRDVLGIAQTGTGKTASFVLPLLQR 63

Query: 63  LFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSA-CIFGGVGMNP 121
           L     P       P +PR L+LTPTRELA Q+ +S     R L  +    + GGV +  
Sbjct: 64  LTKDPQP-----RVPGRPRALILTPTRELAQQITESIGDLGRTLSAIRCGVVVGGVDILR 118

Query: 122 QIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARL 181
           Q + + +G+++LVA PGRL DL  +  VDL  +E+LVLDEADRMLDMGF   VKK+ A L
Sbjct: 119 QTRMVQRGLEILVATPGRLQDLMNRKAVDLRAIEVLVLDEADRMLDMGFAPAVKKIAAVL 178

Query: 182 PAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLA 241
           P KRQ ++FSAT   ++T L   L+++P R+EV P  +   RI+QRV  +  ++KR LL 
Sbjct: 179 PRKRQTVMFSATLPNEVTGLVASLMNDPVRVEVAPAASVANRIDQRVLFVEQTNKRKLLL 238

Query: 242 HLI-TLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV 300
            L+      E+ +VFTRTKHGAN+L  +L + G+ +  IHGNKSQ AR +AL DFK+  V
Sbjct: 239 DLLGDARKVERAIVFTRTKHGANKLGIFLLEYGVKSDVIHGNKSQGARQRALNDFKSGKV 298

Query: 301 RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           R LVATDIAARG+D+D + HV+NF+LPN  E YVHRIGRT RAG +G A+SL AP E   
Sbjct: 299 RALVATDIAARGIDVDGITHVINFDLPNEPESYVHRIGRTARAGAAGIALSLCAPQEMPY 358

Query: 361 LKSIERVTKQRI 372
           LK+IE+V K RI
Sbjct: 359 LKAIEKVIKSRI 370