Pairwise Alignments

Query, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 447 a.a., putative ATP-dependent RNA helicase RhlE from Phaeobacter inhibens DSM 17395

 Score =  358 bits (918), Expect = e-103
 Identities = 189/434 (43%), Positives = 271/434 (62%), Gaps = 9/434 (2%)

Query: 3   FASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62
           F+++GL E L+  I   GYT PTP+Q RAIP  L G+D++  AQTGTGKT  F +P++ +
Sbjct: 9   FSTMGLPEKLLTRIAELGYTDPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLIAQ 68

Query: 63  LFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMNPQ 122
           +   G     ++   +  R LVL PTRELA Q+  + K      P+ +  + GGV +NPQ
Sbjct: 69  MMQYG-----RKPAAKTVRGLVLAPTRELANQIAANLKGLTEGTPIKTGLVVGGVSINPQ 123

Query: 123 IQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARLP 182
           I  +++G D+L+A PGRLLD+  +G +DL   + LVLDEAD+MLD+GFIH ++K+ A LP
Sbjct: 124 ISRLSRGTDILIATPGRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLP 183

Query: 183 AKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLAH 242
            +RQ +LFSAT  K + ++A+  L +P RIEV PP    ++I Q V+ +  + K +LL  
Sbjct: 184 EQRQTMLFSATMPKQMNEIANSYLQSPVRIEVNPPGKAADKITQSVHFIAKAEKLSLLKE 243

Query: 243 LITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSVRV 302
           L+     E+ LVF RTKHG  +L + L   G +AAAIHGNKSQ  R +ALA FK+  V++
Sbjct: 244 LLGAHKDERTLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALASFKSGEVKI 303

Query: 303 LVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLK 362
           LVATD+AARGLDI  + +V N+ELPNV + YVHRIGRT RAG+ G+A++  APDE   LK
Sbjct: 304 LVATDVAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEMGELK 363

Query: 363 SIERVTKQRIADGDLMGFDASQVEAEKPEARE---RPQNNGRGGRNQQARGEGGKDTNGG 419
           +I++     I       ++    +A+ P  R    +P   G+ G +++ R  GG    GG
Sbjct: 364 AIQKTMNLNIPVASGRPWEVLP-DAKAPAGRRGGGKPGGGGKPGGHRRRRSGGGGGGQGG 422

Query: 420 RKDKGKDKGKARQQ 433
            +  G+  G+   Q
Sbjct: 423 ARSGGQGAGQGGGQ 436