Pairwise Alignments

Query, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 432 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  350 bits (897), Expect = e-101
 Identities = 192/432 (44%), Positives = 275/432 (63%), Gaps = 6/432 (1%)

Query: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           M F S   +  ++ AI   GY + TP+Q+ AIPA+ +G+D++ +AQTGTGKT  FALPIL
Sbjct: 1   MRFESFSFAPEILHAISECGYQKMTPIQKEAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120
           +++F +  P  +QR   R    L+L PTREL AQV D+ K Y+R LP+    ++GGV M+
Sbjct: 61  QKMFDS--PSDTQRSNTR---ALILAPTRELVAQVADNIKQYSRYLPISVLTVYGGVKMD 115

Query: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180
            Q   + KG D++VA PGRLL+      ++L++V+ LVLDEADRMLDMGFI D++K+L +
Sbjct: 116 TQAAKVKKGADIIVATPGRLLEHLQACNLNLSNVDFLVLDEADRMLDMGFITDIQKILQQ 175

Query: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL 240
           +   RQNLLFSATFS  +  LA+++L  P+ I V   NTT   + Q VY +    KR LL
Sbjct: 176 VNRDRQNLLFSATFSSAVKQLANEMLVKPKLIAVDKQNTTAVTVSQVVYPVEQRRKRELL 235

Query: 241 AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV 300
           + LI    W+QVLVFT T+  A+ L + L   G+ +A +H  K+Q  R +AL +FK   V
Sbjct: 236 SELIGKKNWQQVLVFTATREAADVLVKELNLDGIPSAVVHSEKAQGNRRRALREFKEGKV 295

Query: 301 RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           R LVAT++AARGLDI +L +VVNF+LP + EDYVHRIGRTGRAGR+G AISLV+ +EE+ 
Sbjct: 296 RALVATEVAARGLDIPELEYVVNFDLPFLAEDYVHRIGRTGRAGRTGVAISLVSREEERT 355

Query: 361 LKSIERVTKQRIADGDLMGFDASQVEAEKPEARERPQNNGRGGRNQQARGEGGKDTN-GG 419
           L  IE++   +I    + G++    +    + ++R     +  R+     +   + N G 
Sbjct: 356 LADIEKLIGNKIRRITIPGYEVGSRDLLIKQLQKRRSFAKKQQRSDNVGAQVIAEKNMGA 415

Query: 420 RKDKGKDKGKAR 431
           R+ K K+   A+
Sbjct: 416 RRVKVKNSSNAK 427