Pairwise Alignments

Query, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 491 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  465 bits (1197), Expect = e-135
 Identities = 258/497 (51%), Positives = 332/497 (66%), Gaps = 35/497 (7%)

Query: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           MSF SLGLS  +++A+   GY  P+P+Q +AIPAVL G+D+M AAQTGTGKT GF LP+L
Sbjct: 1   MSFTSLGLSAPILKAVADKGYQTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120
           E L       +  R   +Q R LVLTPTRELAAQ+ +S   Y + LPL SA +FGGVG++
Sbjct: 61  ELL------SQGPRARSKQVRALVLTPTRELAAQIAESVTTYGQHLPLRSAVVFGGVGIS 114

Query: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180
           PQI  + +GVD+LVA PGRLLDL  Q  V  + +E LVLDEADRMLDMGFIHD+KK+LA 
Sbjct: 115 PQISQLKRGVDILVATPGRLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKKILAI 174

Query: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL 240
           LP KRQNL+FSATFS +I  LA  L++NP  I VTP N+T   ++Q +  +  + K A L
Sbjct: 175 LPPKRQNLMFSATFSDEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPVDKNKKSAAL 234

Query: 241 AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV 300
             LI  G W+QVLVF+RTKHGANRLA++LE +G+TAAAIHGNKSQ ARTKALA+FK+  V
Sbjct: 235 VKLIQQGDWQQVLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDV 294

Query: 301 RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           RVLVATDIAARGLDIDQLP VVNF+LPNV EDYVHRIGRTGRAG  G+A+SLV+ +E KL
Sbjct: 295 RVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLVSDEEAKL 354

Query: 361 LKSIERVTKQRIADGDLMGFDASQVEAEKPEARERPQNNG--RGGRNQQARG----EGGK 414
           L  IER+  + +   ++ GF+ +      PE    P+ +G  +G RN + +        +
Sbjct: 355 LADIERLIGKLLPRAEVEGFEPTHT---LPETNLTPKRHGQHKGPRNPKPKSNSQRSSNR 411

Query: 415 DTNGGRKDK-----------GKDKGKARQQAAA-----KPDDKEKSGDKQQPRKPRD--- 455
            +NG R DK           G  +G+ R++  A     KP  + +    Q  ++ RD   
Sbjct: 412 SSNGQRSDKAGQPRRGDQAQGNKEGQGRRRTGASTGTSKPASEGQQAQNQGKQEHRDGNA 471

Query: 456 -KKSRPQQASNNSVPKP 471
             + R ++  +   PKP
Sbjct: 472 PARRRRRRRPSQGTPKP 488