Pairwise Alignments

Query, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 474 a.a., DNA/RNA helicase, superfamily II from Dechlorosoma suillum PS

 Score =  368 bits (945), Expect = e-106
 Identities = 217/466 (46%), Positives = 281/466 (60%), Gaps = 17/466 (3%)

Query: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           M F  LGL+  +++A+   GY + TP+QQ+AIP VLQG+DL   AQTGTGKT  F LP++
Sbjct: 1   MRFDELGLAPEILKAVTEMGYAEATPIQQQAIPLVLQGKDLKACAQTGTGKTAAFTLPLI 60

Query: 61  ERLFPAGHPDKSQRHGPRQP-RVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGM 119
           +RL    H D +     + P R L+L PTRELA QV++S K Y +     S C+FGGV +
Sbjct: 61  QRLL---HLDTASPSPAKHPVRALMLAPTRELALQVYESVKSYTKYTHFRSICLFGGVDI 117

Query: 120 NPQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLA 179
            PQI  + KGV+ +VA PGRLLD   Q  V    V+ LVLDEADRMLDMGFI D++++L 
Sbjct: 118 KPQIAEMKKGVEFVVATPGRLLDHVEQKSVSFNQVQALVLDEADRMLDMGFIPDIQRILN 177

Query: 180 RLPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRAL 239
            LP  RQ+LLFSATFS +I  LAD +L +P  +EV   N   + I  RV+ +  + K+ L
Sbjct: 178 MLPKTRQSLLFSATFSNEIQRLADTMLQSPILVEVARRNQVNDTITHRVHPVAETRKKDL 237

Query: 240 LAHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANS 299
           L  L+  G   Q LVF RTK G  RLA  LE+ G+ A +IHG+KSQN R KAL  FK   
Sbjct: 238 LIKLLRSGEITQTLVFMRTKQGCGRLARELERAGIAADSIHGDKSQNERIKALDAFKNGG 297

Query: 300 VRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEK 359
            +VLVATD+AARGLDID LP+V+NFELP+  EDYVHRIGRTGRAGR G AISLV   E  
Sbjct: 298 CKVLVATDVAARGLDIDHLPYVINFELPHTPEDYVHRIGRTGRAGRQGNAISLVCAHEVG 357

Query: 360 LLKSIERVTKQRIADGDLMGFDASQVEAEKPEARERPQNNGRGGRNQQARGEGG---KDT 416
            L  IE++ K +I    + GF+        P + ++ + +     +Q   G      K  
Sbjct: 358 YLADIEKLIKMQIEQVAVAGFEPEMDYEYPPGSGKKRRAHETHAPSQPVAGRSKPPVKRN 417

Query: 417 NGGRKDKGKDKGKARQQAAAK---PDDKEKS------GDKQQPRKP 453
           N   KD G D  K  +  AA    P  +E +       D  +P+KP
Sbjct: 418 NMIAKD-GFDFSKPYEPKAAPATVPSKEEAAHTPVGKPDPHKPKKP 462