Pairwise Alignments

Query, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 473 a.a., DNA/RNA helicase, superfamily II from Dechlorosoma suillum PS

 Score =  461 bits (1187), Expect = e-134
 Identities = 248/463 (53%), Positives = 309/463 (66%), Gaps = 18/463 (3%)

Query: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           M F  LGL   ++RAI   GYT+PTP+QQ+AIPAVL GRDLM  AQTGTGKT GF LPIL
Sbjct: 1   MLFTDLGLKAEILRAIAEQGYTEPTPIQQQAIPAVLAGRDLMACAQTGTGKTAGFTLPIL 60

Query: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120
           + L  A   +       R+PRVL+L PTRELA QV +S + Y + LPL S  +FGGVGMN
Sbjct: 61  QLLSQAQAGESPLNRLARKPRVLILAPTRELALQVEESVRTYGQHLPLKSMSMFGGVGMN 120

Query: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180
           PQI A+ +GVD+LVACPGRLLD   Q  +DL+ +EILVLDEADRMLDMGFI D++K+LA 
Sbjct: 121 PQIAALKRGVDILVACPGRLLDHINQRTLDLSGIEILVLDEADRMLDMGFIRDIRKILAL 180

Query: 181 LP--AKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRA 238
           LP   KRQNLLFSATFS +I +LA   LH+P+ IEV   NTTVE + Q+V  +    K+ 
Sbjct: 181 LPPNGKRQNLLFSATFSDEIKELARSFLHDPQSIEVARRNTTVETVSQKVIHVDREKKKD 240

Query: 239 LLAHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKAN 298
           +L HL     W QVL+FTRTKHGA+ L+  L+K+G+ +AA+HGNK+Q AR +AL +FK  
Sbjct: 241 VLLHLFENRGWNQVLIFTRTKHGADALSRRLDKEGIRSAALHGNKTQGARVRALTEFKEG 300

Query: 299 SVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEE 358
            +  LVATDIAARG+DIDQLP+VVN+ELPNV EDYVHRIGRTGRAG  GEAISLV  DE 
Sbjct: 301 KLVALVATDIAARGIDIDQLPYVVNYELPNVAEDYVHRIGRTGRAGAEGEAISLVCHDER 360

Query: 359 KLLKSIERVTKQRIADGDLMGFDASQVEAEKPEARERPQNNGRGGRNQQARGE------- 411
             L+SIER+ K+ +    L GF+ S      P      Q  G+G R  Q +G+       
Sbjct: 361 DNLRSIERLIKKDLEKEVLPGFEPSANPTPAPPQNRGGQRQGQGQRQGQRQGQGQPGRSF 420

Query: 412 ---------GGKDTNGGRKDKGKDKGKARQQAAAKPDDKEKSG 445
                    GG   +GGR   G+ + ++   AA+      +SG
Sbjct: 421 GNNGGGNRSGGNGGSGGRGQGGEGRSRSGGGAASGNGGTPRSG 463



 Score = 50.8 bits (120), Expect = 1e-10
 Identities = 36/103 (34%), Positives = 48/103 (46%), Gaps = 6/103 (5%)

Query: 451 RKPRDKKSRPQ-QASNNSVPKPPADRDPEEFLDDELDNFGNRADYVSPYQ--GKNQGRNR 507
           +K  +K+  P  + S N  P PP +R  +     +    G R     P +  G N G NR
Sbjct: 371 KKDLEKEVLPGFEPSANPTPAPPQNRGGQR--QGQGQRQGQRQGQGQPGRSFGNNGGGNR 428

Query: 508 RPGGAGQG-QGQGNGQRSNAGGQGQARNGGQPRSGGGEKRPPR 549
             G  G G +GQG   RS +GG   + NGG PRSGG  +   R
Sbjct: 429 SGGNGGSGGRGQGGEGRSRSGGGAASGNGGTPRSGGNHRNGTR 471