Pairwise Alignments

Query, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

Subject, 475 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  348 bits (894), Expect = e-100
 Identities = 197/470 (41%), Positives = 275/470 (58%), Gaps = 21/470 (4%)

Query: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           M F+ LGL  ALV+A+   GY  PTP+Q +AIP++L G++++ AAQTGTGKT  F LP+L
Sbjct: 1   MPFSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60

Query: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120
            R   A       +  P++ R ++LTPTRELA QV  +   YA+ LPL +  ++GGV   
Sbjct: 61  HRFADA------PKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAA 114

Query: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180
           PQ + + +GVD+LVA PGRLLD+  Q  +    V +LVLDEADRMLDMGFI D+  ++ +
Sbjct: 115 PQKKRLIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEK 174

Query: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL 240
           LP +RQNLLFSAT SK +  LA   + +   IE++  N    +I+Q +  +    K ALL
Sbjct: 175 LPEQRQNLLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTTVDKDRKSALL 234

Query: 241 AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV 300
           +HLI    W Q L+F +TKHGA +L   LEK+G+ A A H  +SQ  R + L DFKA  V
Sbjct: 235 SHLIKENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKV 294

Query: 301 RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
             LVAT + +RG+DID L  V+N++LP+  +DY+HRIGRTGRAG  GEAIS V+ D+ + 
Sbjct: 295 PFLVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRN 354

Query: 361 LKSIERVTKQRIADGDLMGFDASQ---------VEAEKPEARERPQNNGRGGRNQQARGE 411
           L +IER     I   ++ GF+  +         V      +  +P NN    ++Q +   
Sbjct: 355 LCAIERRLGHIIERKNIEGFEPKKAVPISILDFVPKSASRSAHKP-NNTAAVKDQASPYS 413

Query: 412 GGKDTNGGRKDKGKDKGKARQQAAAKPDDKEKSGDKQQPRKPRDKKSRPQ 461
            GK            + K  + A AKP  K+ +     P   R +  R Q
Sbjct: 414 SGKPGT-----FEATQAKKHRSAKAKPQSKQVARLTPPPVNERSEAQRTQ 458