Pairwise Alignments

Query, 262 a.a., putative Periplasmic binding protein from Pseudomonas putida KT2440

Subject, 286 a.a., extracellular solute-binding protein (RefSeq) from Shewanella loihica PV-4

 Score = 67.0 bits (162), Expect = 4e-16
 Identities = 55/238 (23%), Positives = 108/238 (45%), Gaps = 10/238 (4%)

Query: 28  VTDDWAPYVFQHNGQPRGIDYEVASQVFARLGVEVEWQFLPWKRCLAMAEQGLADGILDI 87
           V++D+ P+ +       G+ Y +   VF   G  +  +F P+ R   + ++ LAD I+ +
Sbjct: 56  VSNDYPPF-YSPQMSEWGVVYHLVEAVFEHAGYPLSHEFYPFIRAQTLIKRELADLIIGV 114

Query: 88  FQTDARQPYMVYGAEPMSEVEFVLFQSRSRRHAVTHLDDLAGLTVGTSPGYAYGKGFTEA 147
           +    R+ ++ + ++P+  V   L++    +     + DL    +G   GYA    F +A
Sbjct: 115 WYRPEREQWIDF-SDPLLSVSIRLYKRSDSKIVFRDIKDLKPYLIGIGRGYANPVAFGQA 173

Query: 148 PHFKREAAPTQEANFGKLILGRIDLVITDRRVGHYLLRQLGLQQ--QVEELPLVISRQAQ 205
            +   EAA +   N  KL+ GR+DLV+    V  YL+ + G +   ++E +   +S +  
Sbjct: 174 -NLNTEAASSDAVNLRKLLAGRVDLVLICEDVARYLIERPGSEYNGKLEPVGDPLSVELF 232

Query: 206 YLGLVRK-PGREALAVAFAEELQRFKQEPAYAAISNRYTTDTGNILNAVEQQESSTAR 262
           ++G+ +  P    +   F + L    +      I        G   NA  QQ+S +++
Sbjct: 233 HIGVAKHLPNARQILADFNQSLAELHRSGELTKI----LASHGFEHNAYWQQKSQSSQ 286