Pairwise Alignments

Query, 262 a.a., putative Periplasmic binding protein from Pseudomonas putida KT2440

Subject, 273 a.a., hypothetical amino acid ABC transporter (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 62.0 bits (149), Expect = 1e-14
 Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 11/212 (5%)

Query: 30  DDWAPYVFQHNGQPRGIDYEVASQVFARLGVEVEWQFLPWKRCLAMAEQGLADGILDIFQ 89
           D W P+  Q     +GI +++    F +  +EV    +P+ R L MAE+G  DG+ ++ +
Sbjct: 60  DSWPPFANQFG---QGISHQLIEAAFKQTQIEVNSLVVPYSRALMMAEKGAVDGVFNVTR 116

Query: 90  TDARQPYMVYGAEPMSEVEFVLFQSRSRRHAVTHLDDL-AGLTVGTSPGYAYGKGF---T 145
             + +   V+G  P+   +   +Q +       +   +  G  +G    Y YG  F    
Sbjct: 117 EASTEQRFVFGNTPLFAAKASFYQRKKLPLIAENKWQIPKGSMIGVIKSYEYGDEFPKLV 176

Query: 146 EAPHFKREAAPTQEANFGKLILGRIDLVITDRRVGHYLLRQLGLQQQVEELPLVISRQAQ 205
           +          TQ+     L++GRID  +    V    L+++G+  +V   P   +  +Q
Sbjct: 177 KQRQLNLVTVATQQQLINLLLIGRIDAAVMFDLVAQENLQKMGVSDEV--FPAFDNHISQ 234

Query: 206 -YLGLVRK-PGREALAVAFAEELQRFKQEPAY 235
            YL   ++ P    LA A  + L   K+   Y
Sbjct: 235 IYLAFSKENPKATLLAKALDQGLSMLKENGQY 266