Pairwise Alignments

Query, 566 a.a., DNA ligase B from Pseudomonas putida KT2440

Subject, 669 a.a., DNA ligase (NAD(+)) LigA from Vibrio cholerae E7946 ATCC 55056

 Score =  136 bits (342), Expect = 3e-36
 Identities = 144/574 (25%), Positives = 250/574 (43%), Gaps = 54/574 (9%)

Query: 35  VAQLRATLARWDEHYHRQGIALVADELYDQSHERLNHLQQCFA-VGTSPSPLASARG--- 90
           + +LR TL      Y+ +    + D  YD+    L  L+     + +S SP     G   
Sbjct: 8   LTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSLRVGGRPL 67

Query: 91  ----PVPHPVPHTGVDKLADR---QAVARWMTGK------TGVWVQPKVDGVAVSLTYQQ 137
                V H +P   +D   D    ++  R MT +      +    +PK+DG+AVSL Y+ 
Sbjct: 68  DAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSAFCCEPKLDGLAVSLLYEN 127

Query: 138 GRLVQLTSRGDGVHGHDWSRHIPQLGAVTRQLPEA---VDLHLQGELYLRLD--EHVQAK 192
           G L +  +RGDG  G + + ++  + ++  +L  A     L ++GE+++     E + A+
Sbjct: 128 GVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAGFEALNAR 187

Query: 193 AGS------ANARGTVAGLLAR--KQLTGAQGNAIGLFVWGWPHGPE---QQAERLAQLA 241
           A         N R   AG L +   ++T  +  A   +  G   G E      +R  QL 
Sbjct: 188 ALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHYQRFLQLK 247

Query: 242 RLGFPDSQLYSIAIDTLEDAAHWREHWYR-SALPFATDGVILRQGSRPPAER--WQAKAP 298
             G P      +     E  A +++   R  +L +  DGV+++       ER  + A+AP
Sbjct: 248 GWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERLGFVARAP 307

Query: 299 YWIAAWKYPYAQALAEVRDVRFRVGRTGRVTPVLHVQPVTLDDRRITQVSLGSLARWQRL 358
            W  A+K+P  + L  + DV F+VGRTG +TPV  ++PV +    ++  +L +    +RL
Sbjct: 308 RWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIERL 367

Query: 359 DIRPGDQVAISLAGLTIPRLEHVV-HRAVE---------RQPITAPAPDQHHAHSCWQAS 408
            +  GD V I  AG  IP++  VV  R  E         R P+     ++    +  + S
Sbjct: 368 GVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEGEAVARCS 427

Query: 409 EG--CDEQFIARLTWLGGKQGLALPRTGPGTWRRLVEAGLVTSMTDWLQLDAERLQQAPG 466
            G  C  Q    L     ++ + +   G     +LV+  +V++  D  +L A  L     
Sbjct: 428 GGLICQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRAGELTILER 487

Query: 467 ISRLTATQMLGSFDQARSRPFDQWLRALGV-PIGKHLPLT-----GNWQALASRSAGQWQ 520
           +   +A  ++ + ++A+     ++L ALG+  +G+   L       + +A+   S  Q+ 
Sbjct: 488 MGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQQASLEQFI 547

Query: 521 TVPGIGAKRSRQLVEFFAASEVQAIAAQLAEAGI 554
            VP +G   +  L  FFA    Q +  +L E GI
Sbjct: 548 EVPDVGVVVASHLQAFFAQDRNQQVINELLEQGI 581