Pairwise Alignments

Query, 566 a.a., DNA ligase B from Pseudomonas putida KT2440

Subject, 679 a.a., NAD-dependent DNA ligase LigA from Synechococcus elongatus PCC 7942

 Score =  150 bits (378), Expect = 2e-40
 Identities = 146/581 (25%), Positives = 252/581 (43%), Gaps = 69/581 (11%)

Query: 36  AQLRATLARWDEHYHRQGIALVADELYDQSHERLNHLQQCFAVGTSPSPLASARGPVP-- 93
           ++LR  L +    Y+     ++ D +YD+ +  L  L+Q      +P       G  P  
Sbjct: 18  SELRQLLQQASYAYYVLDQPVMEDAVYDRLYRELQDLEQQHPSLITPDSPTQRVGEQPAT 77

Query: 94  ------HPVPHTGVDKLADRQAVARW----------MTGKTGVWVQPKVDGVAVSLTYQQ 137
                 H +P   ++   D + +  W          +    G   + K+DG A++L+Y+ 
Sbjct: 78  GFESVQHRIPLYSLENAFDAEELRSWDQRWRKLAPDVPADAGYVCELKIDGAAIALSYEN 137

Query: 138 GRLVQLTSRGDGVHGHDWSRHIPQLGAV-----TRQLPEAVDLHLQGELYLRLDEHVQ-- 190
           G LV+  +RGDG  G + + ++  + ++     T Q PE   L ++GE +L L    Q  
Sbjct: 138 GLLVRGATRGDGTRGEEITANLRTIKSIPLRLQTDQPPEW--LEVRGEAFLSLTRFKQLN 195

Query: 191 ------AKAGSANARGTVAGLLARKQLTGAQGNAIGLFVWGWPHGPEQ-----QAERLAQ 239
                  +A  AN R   AG L +          +  F +    GP       QA  L  
Sbjct: 196 TEREKHGEALFANPRNAAAGTLRQLDPRIVAERQLDFFAYSI-QGPNDWANLDQAASLDC 254

Query: 240 LARLGFPDSQLYSIAIDTLEDAAHWREHW--YRSALPFATDGVILRQGSRPPAER--WQA 295
           L  LGF   + +     TL +   +   W   R  LP+ TDGV+++  SR   +   +  
Sbjct: 255 LQSLGFR-VEPHRQTCPTLAEVEQYFSDWDARRRDLPYLTDGVVVKLQSRRLQDELGFTQ 313

Query: 296 KAPYWIAAWKYPYAQALAEVRDVRFRVGRTGRVTPVLHVQPVTLDDRRITQVSLGSLARW 355
           K P W  A KYP  +A  +++ V  +VGRTG +TPV    PV L    +++ +L +  R 
Sbjct: 314 KFPRWAIALKYPADEAPTQLQHVTVQVGRTGALTPVAEFSPVALAGTTVSRATLHNADRL 373

Query: 356 QRLDIRPGDQVAISLAGLTIPRLEHVVH--RAVERQPITAPAPDQHHAHSCWQASEGCDE 413
           + LD+  GD + +  AG  IP +  V+   R  + +P+  P         C Q  +  +E
Sbjct: 374 RELDLHIGDTIVVRKAGEIIPEVVRVLTDLRPADAKPVVLP----EKCPECGQPVQRPEE 429

Query: 414 QFIAR-------------LTWLGGKQGLALPRTGPGTWRRLVEAGLVTSMTDWLQLDAER 460
           + + R             LT    +  L +   G     +LV  GLV ++ D  +LDA  
Sbjct: 430 EAVTRCVNSTCPAIVRGALTHWASRDALDIEGLGEKLVDQLVSKGLVNAIADLYRLDAPL 489

Query: 461 LQQAPGISRLTATQMLGSFDQARSRPFDQWLRALGV-PIG----KHLPLT-GNWQALASR 514
           L         +A  ++ +  ++R +P+ + L  LG+  +G    K+L  T  + +ALA  
Sbjct: 490 LASLERFGEKSAQNLVQAIAKSRQQPWSRVLYGLGIRHVGSVNAKNLAATFTSAEALAQA 549

Query: 515 SAGQWQTVPGIGAKRSRQLVEFFAASEVQAIAAQLAEAGIE 555
           +  +   V GIG++ +  + ++F  +  Q + A L +AG++
Sbjct: 550 TPDELAAVYGIGSEIADAVHQWFTVATNQNLIAALEQAGLQ 590