Pairwise Alignments

Query, 566 a.a., DNA ligase B from Pseudomonas putida KT2440

Subject, 666 a.a., DNA ligase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  136 bits (343), Expect = 2e-36
 Identities = 133/581 (22%), Positives = 253/581 (43%), Gaps = 55/581 (9%)

Query: 32  KAEVAQLRATLARWDEHYHRQGIALVADELYDQSHERLNHLQQC---FAVGTSP-----S 83
           K ++ +LRA L R + +Y+      ++D+ +D     L  L+     +    SP     S
Sbjct: 4   KEKIEELRAELHRHNYNYYVLNAPEISDKEFDDKMRELQDLELAHPEYKDENSPTMRVGS 63

Query: 84  PLASARGPVPHPVPHTGVDKLADR-------QAVARWMTGKTGVWVQPKVDGVAVSLTYQ 136
            +      V H  P   +             + V + +     +  + K DG ++SLTY+
Sbjct: 64  DINKNFTQVAHKYPMLSLANTYSEGEVTDFYERVRKALNEDFEICCEMKYDGTSISLTYE 123

Query: 137 QGRLVQLTSRGDGVHGHDWSRHIPQLGAVTRQL-----PEAVDLH----LQGELYLRLDE 187
            G+LV+  +RGDG  G D + ++  + ++   L     P + ++     +  E++  L+ 
Sbjct: 124 DGKLVRAVTRGDGEKGDDVTDNVKTIRSIPLVLHGDNYPSSFEIRGEILMPWEVFEELNR 183

Query: 188 HVQAKAGS--ANARGTVAGLLARKQLTGAQGNAIGLFVW---GWPHGPEQQAERLAQLAR 242
             +A+     AN R   +G L  +  +      +  +++   G     +   E L + A+
Sbjct: 184 EKEAREEPLFANPRNAASGTLKLQNSSIVASRKLDAYLYYLLGDNLPCDGHYENLQEAAK 243

Query: 243 LGFPDSQLYSIAIDTLEDAAHWREHW--YRSALPFATDGVILRQGSRPPAER--WQAKAP 298
            GF  S L +    TLE+   +  +W   R  LP ATDG++L+  S    +   + AK+P
Sbjct: 244 WGFKISDL-TRKCQTLEEVFEFINYWDVERKNLPVATDGIVLKVNSLRQQKNLGFTAKSP 302

Query: 299 YWIAAWKYPYAQALAEVRDVRFRVGRTGRVTPVLHVQPVTLDDRRITQVSLGSLARWQRL 358
            W  A+K+   +AL  +  V ++VGRTG VTPV ++  V L    + + SL +    + L
Sbjct: 303 RWAIAYKFQAERALTRLNMVTYQVGRTGAVTPVANLDAVQLSGTVVKRASLHNADIIEGL 362

Query: 359 DIRPGDQVAISLAGLTIPRLEHVVHRA-----VERQPITAPAP---------DQHHAHSC 404
           D+  GD V +   G  IP++  V   A      E+       P         +   AH C
Sbjct: 363 DLHIGDMVYVEKGGEIIPKITGVDKDARSFMLGEKVRFITNCPECGSKLIRYEGEAAHYC 422

Query: 405 WQASEGCDEQFIARLTWLGGKQGLALPRTGPGTWRRLVEAGLVTSMTDWLQLDAERLQQA 464
                 C  Q   ++     ++ + +   GP T       GL+ +  D  +L A+ ++  
Sbjct: 423 -PNETACPPQIKGKIEHFISRKAMNIDGLGPETVDMFYRLGLIHNTADLYELKADDIKGL 481

Query: 465 PGISRLTATQMLGSFDQARSRPFDQWLRALGV-----PIGKHLPLT-GNWQALASRSAGQ 518
             +   +A  ++   +Q+++ PF++ + ALG+      + K +  + G+   L      +
Sbjct: 482 DRMGEKSAENIITGIEQSKTVPFERVIFALGIRFVGETVAKKIAKSFGDIDELRQADLEK 541

Query: 519 WQTVPGIGAKRSRQLVEFFAASEVQAIAAQLAEAGIEGFRT 559
             ++  IG K +R ++ +F+    + +  +L EAG++ +RT
Sbjct: 542 LISIDEIGEKIARSILLYFSNESNRELVGRLKEAGLQLYRT 582