Pairwise Alignments

Query, 708 a.a., diguanylate cyclase from Pseudomonas putida KT2440

Subject, 1076 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  322 bits (825), Expect = 6e-92
 Identities = 205/597 (34%), Positives = 319/597 (53%), Gaps = 19/597 (3%)

Query: 109  ASGAVDYMFKPFDPQILKPKVQALLDQQRNRRMLQQLSRELETARAFNASILENAAEGIL 168
            A G ++   +    ++ +   Q +L+    R + Q L R    A A    I E+A EGI 
Sbjct: 466  AHGMLERKVRERTRELSRANAQLMLENAERRTVEQALRR----AEARFRGIFEHALEGIF 521

Query: 169  VVDAHGIIRFANPAISRLLAAPVQHLQGTQ-LLDVVQLTSTSLW----RESDFYKAYQGR 223
                 G     NPA++R+L       +G Q LL+ V+     ++    R  +F    +  
Sbjct: 522  QSTPEGRFLSVNPAMARILG-----YEGVQELLEGVESIGDGVYADPARRDEFVARMEEH 576

Query: 224  QIYRVHDAQLRTQGGELVPVALSCAPLP-ADQQAMVVT--VLDMSAVRNLHQQLEYQAIT 280
                  + + R +GG+L+ ++++   +P AD   M     + D++      ++LE+QA  
Sbjct: 577  GQVNAFEFRGRRKGGDLIWLSVNARRVPGADGATMYYEGFLEDVTMGHESRERLEHQAFH 636

Query: 281  DPLTGLLNRRGFYQAAEGALLRN-ERSDKAQALMYMDLDGFKRINDSLGHDAGDRVLRWV 339
            DPLTGL NR  F+   + AL R   R +   A++Y+DLD FK INDSLGHD GD +L+ V
Sbjct: 637  DPLTGLPNRVLFHDRLQMALKRAARRRNYTFAMLYLDLDRFKVINDSLGHDVGDALLKVV 696

Query: 340  AEQLKDCLGSEALLARMGGDEFTALFDSLPYPEQAGRFAERLLERVSISHEVDGLDVCLG 399
            + +L++C+     +AR GGDEF  L +  P    A R A R+   ++    +   +V   
Sbjct: 697  SAKLRECVRDVDTVARFGGDEFGVLLEETPTRGTAVRVARRIRAHLAEPVRIGPHEVFTT 756

Query: 400  VSIGIATYPDCGANVEGLLRSADAAMYAAKQAGRQQYRFYDQELNGRARSRLMLEDSVRM 459
             SIGI    D  +  E L+R AD AMY AK+ G+ +++ +++ +   A   L +E  +R 
Sbjct: 757  ASIGIVLRTDQYSTPEELVRDADTAMYRAKEQGQSRFKVFNKRMREEALRLLTIETDLRR 816

Query: 460  AIEQQDFTLVYQPQVAFHDGRLRGFEALLRWQHPSVGDVPPGLFIPLLEEARLINRLASW 519
            A+E+Q+  L YQP VA  DG L G EALLRW     GD+ P  F+P+ E+  LI  + ++
Sbjct: 817  AVERQEMRLHYQPVVALEDGGLHGVEALLRWTRTEGGDISPAEFVPVAEDTGLITSIGAF 876

Query: 520  IYRQGAAQRQAWYDR-FPPDLVLGISLSRAQFVMPGLVEELQRVIQLYQLVPTQLEVEVA 578
               +   Q + W +   PP  V+ +++S  QF+ PGL   ++ +++     P  L  EV 
Sbjct: 877  ALEEVCLQLRRWNEAGLPPPGVVHVNISGRQFMQPGLPHAVEMLLERTGTDPRSLRFEVT 936

Query: 579  ETSLMYNIDAAVKQIHRLRELGVRVALDDFGAGDCSLRMLRDLPIDTLKLDRHLVARLPD 638
            E+ LM +   A+  + +LR+LG+R+ LDDFG G  SL  L+ LP+D++K+DR  VA L  
Sbjct: 937  ESVLMRHGSQAITVMAQLRDLGIRLCLDDFGTGYSSLGYLKRLPVDSIKIDRSFVAGLEH 996

Query: 639  STVDAALVRSVIGLCADYRITVIAEGVETPAQAAWLKANGCEYVQGFLVAYPMTATD 695
                 A+VRS++ L     + ++AEGVETP QA  L + GC Y QGFL A P++A D
Sbjct: 997  DRDGQAIVRSIVSLGLHLGLEIVAEGVETPTQAEMLASLGCRYAQGFLYAPPVSADD 1053



 Score = 26.9 bits (58), Expect = 0.005
 Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 13/105 (12%)

Query: 142 LQQLSRELETARAFNASILENAAEGILVVDAHGIIRFANPAISRLLAAPVQHLQGTQLLD 201
           ++Q + EL  A    ++I+   A+G+LV D  G++  +N A+  +         G  + +
Sbjct: 261 VRQATAELGGALEQLSTIVAGMADGLLVTDPQGLVLRSNAALCEMFGLDADP-DGRSVCE 319

Query: 202 VVQLTSTSLWRESDFYKAYQGRQIYRVHDAQLRTQGGE-LVPVAL 245
           V    + ++    D            +H+    T+ GE +VP A+
Sbjct: 320 VFGFVAPAVRMVGD-----------GIHEFAFETEDGEDIVPEAV 353