Pairwise Alignments

Query, 461 a.a., ATP-dependent RNA helicase, specific for 23S rRNA from Pseudomonas putida KT2440

Subject, 441 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  253 bits (647), Expect = 7e-72
 Identities = 155/374 (41%), Positives = 219/374 (58%), Gaps = 12/374 (3%)

Query: 8   FATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLLNP 67
           FA+L L   +L  LE L Y   TP+Q +++P +LKG+DL+A A+TG+GKTA F + LL  
Sbjct: 3   FASLGLIDPLLRTLETLDYRKPTPVQIEAIPAVLKGRDLMAAAQTGTGKTAGFALPLLQR 62

Query: 68  INPRYF-----GCQALVLCPTRELADQVAKELRRLARAEDNIKILTLC--GGVSLGPQIA 120
           +            +ALVL PTRELA+QV +  R   +   N+ + T    GGVS+ PQ+ 
Sbjct: 63  LTMEGAKVASNSVRALVLVPTRELAEQVHESFRVYGQ---NLPLRTYAVYGGVSINPQMM 119

Query: 121 SLEHGAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSR 180
           +L  G  ++V TPGR+     +  +  + L  LVLDEADRMLD+GF D +  +    P +
Sbjct: 120 ALRKGIDVLVATPGRLLDLYRQNAVGFNQLQALVLDEADRMLDLGFADELDQLFSALPKK 179

Query: 181 RQTLLFSATYPAGIKQLAADFMRNPQQVKVESLHTDNQ-IEQRFIEIDPQQRLEAVTRVL 239
           RQTLLFSAT+   I+Q+A + +R+P  V+V   +   + ++Q  + +D +++ E    +L
Sbjct: 180 RQTLLFSATFSEAIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPVDKKRKSELFLHLL 239

Query: 240 GHYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLV 299
              R    + F  T++  + +V  L A GI + A+HGD  Q  R + L  F      VLV
Sbjct: 240 AEKRWGQVLVFVKTRKGVDQLVDELQAAGISSDAIHGDKPQASRLRALERFKAGEVQVLV 299

Query: 300 ATDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAI 359
           ATDVAARGLDI  L  V+N +L   AE +VHR+GRTGRAG  G AVSLV+  E  +  AI
Sbjct: 300 ATDVAARGLDIHDLPQVVNFDLPIVAEDYVHRIGRTGRAGATGEAVSLVSADEVDQLAAI 359

Query: 360 EALQNSPL-RWDQL 372
           E L N  L R D+L
Sbjct: 360 ETLINQVLPRHDEL 373