Pairwise Alignments

Query, 461 a.a., ATP-dependent RNA helicase, specific for 23S rRNA from Pseudomonas putida KT2440

Subject, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  248 bits (634), Expect = 2e-70
 Identities = 155/390 (39%), Positives = 229/390 (58%), Gaps = 14/390 (3%)

Query: 1   MTTESTAFATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAF 60
           M+  S  F+ L L + +L  L  LG A+ TPIQ Q++P +L+G+D++A A+TG+GKTAAF
Sbjct: 1   MSELSITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAF 60

Query: 61  GIGLLNPINPRYFG-------CQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGV 113
           G+ L+     + +         +ALVL PTRELA QV   L+  A+  + +KI+ + GG 
Sbjct: 61  GLPLIQRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTE-LKIVAVYGGT 119

Query: 114 SLGPQIASLEHGAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASI 173
           S+  Q+  L  G  I++ TPGR+  H    +L L  +  LVLDEADRMLDMGF   +  +
Sbjct: 120 SMKVQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRV 179

Query: 174 IGKTPSRRQTLLFSATYPAGIKQLAADFMRNPQQVKVE-SLHTDNQIEQRFIEIDPQQRL 232
           + +    RQTL FSAT+ + IK +A   MR+P +V+V  S  T   ++Q    +D +++ 
Sbjct: 180 LRRLSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKR 239

Query: 233 EAVTRVLGHYRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFAN 292
           E ++ ++G    Q  + F  T+Q  + +   L   GI A +++GD  Q  R + L  F  
Sbjct: 240 ELLSYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKA 299

Query: 293 RSSSVLVATDVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAE 352
                L+ATDVAARGLDI  L+ V+N ++   AE +VHR+GRTGRAG  G+AVSL++  E
Sbjct: 300 GKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDE 359

Query: 353 GHRAQAIEALQNSPLRWDQLDSLKNKGGEP 382
             + +AIE L N+ L  + L     KG EP
Sbjct: 360 QPQLEAIERLLNTRLPQEWL-----KGFEP 384