Pairwise Alignments

Query, 461 a.a., ATP-dependent RNA helicase, specific for 23S rRNA from Pseudomonas putida KT2440

Subject, 432 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  247 bits (631), Expect = 5e-70
 Identities = 144/367 (39%), Positives = 217/367 (59%), Gaps = 7/367 (1%)

Query: 8   FATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGLL-- 65
           F +   +  +L  +   GY  MTPIQ +++P I +GQD++A A+TG+GKTAAF + +L  
Sbjct: 3   FESFSFAPEILHAISECGYQKMTPIQKEAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62

Query: 66  ---NPINPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASL 122
              +P + +    +AL+L PTREL  QVA  +++ +R    I +LT+ GGV +  Q A +
Sbjct: 63  MFDSPSDTQRSNTRALILAPTRELVAQVADNIKQYSRYLP-ISVLTVYGGVKMDTQAAKV 121

Query: 123 EHGAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQ 182
           + GA IIV TPGR+ +HL    L L  ++ LVLDEADRMLDMGF   I  I+ +    RQ
Sbjct: 122 KKGADIIVATPGRLLEHLQACNLNLSNVDFLVLDEADRMLDMGFITDIQKILQQVNRDRQ 181

Query: 183 TLLFSATYPAGIKQLAADFMRNPQQVKVESLHTDN-QIEQRFIEIDPQQRLEAVTRVLGH 241
            LLFSAT+ + +KQLA + +  P+ + V+  +T    + Q    ++ +++ E ++ ++G 
Sbjct: 182 NLLFSATFSSAVKQLANEMLVKPKLIAVDKQNTTAVTVSQVVYPVEQRRKRELLSELIGK 241

Query: 242 YRPQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVAT 301
              Q  + F  T++  + +V  L   GI +  +H +  Q +R + L  F       LVAT
Sbjct: 242 KNWQQVLVFTATREAADVLVKELNLDGIPSAVVHSEKAQGNRRRALREFKEGKVRALVAT 301

Query: 302 DVAARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAIEA 361
           +VAARGLDI  L+ V+N +L   AE +VHR+GRTGRAG  GVA+SLV+  E      IE 
Sbjct: 302 EVAARGLDIPELEYVVNFDLPFLAEDYVHRIGRTGRAGRTGVAISLVSREEERTLADIEK 361

Query: 362 LQNSPLR 368
           L  + +R
Sbjct: 362 LIGNKIR 368