Pairwise Alignments

Query, 461 a.a., ATP-dependent RNA helicase, specific for 23S rRNA from Pseudomonas putida KT2440

Subject, 457 a.a., ATP-dependent RNA helicase from Klebsiella michiganensis M5al

 Score =  476 bits (1225), Expect = e-139
 Identities = 251/457 (54%), Positives = 314/457 (68%), Gaps = 3/457 (0%)

Query: 6   TAFATLP-LSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGL 64
           TAF+TL  L  A L NL  LGY SMTP+QA +LP IL G+D+  QAKTGSGKTAAFG+GL
Sbjct: 2   TAFSTLNVLPAAQLTNLNELGYLSMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGL 61

Query: 65  LNPINPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEH 124
           L  ++   F  Q+LVLCPTRELADQVA ELRRLAR   NIKILTLCGG   G Q  SL+H
Sbjct: 62  LQHVDASLFQTQSLVLCPTRELADQVAGELRRLARFLANIKILTLCGGQPFGAQRDSLQH 121

Query: 125 GAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTL 184
             HIIV TPGR+  HL KGT+ LD L TLV+DEADRMLDMGF DAI  +I   P+ RQTL
Sbjct: 122 APHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIRFAPASRQTL 181

Query: 185 LFSATYPAGIKQLAADFMRNPQQVKVESLHTDNQIEQRFIEIDPQQRLEAVTRVLGHYRP 244
           LFSAT+P  I  ++     NPQ ++++++     IEQ+F E     ++  + ++L  ++P
Sbjct: 182 LFSATWPEAIAAISGRVQNNPQTIEIDAVDALPAIEQQFFETSQHGKITLLQKLLSQHQP 241

Query: 245 QSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVATDVA 304
            SCV FC TK+ C+ V   L A G  A +LHGDLEQRDRDQ L  FAN SS VLVATDVA
Sbjct: 242 ASCVVFCNTKKDCQAVCDSLNAAGQSALSLHGDLEQRDRDQTLVRFANGSSRVLVATDVA 301

Query: 305 ARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAIEALQN 364
           ARGLDI  L++V+N ELA D E+HVHR+GRT RAGE G+A+SL AP E  RA  +  +  
Sbjct: 302 ARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGESGLAISLCAPEEAQRANILAEMLQ 361

Query: 365 SPLRWDQLDSLKNKGGEPLLPVMTTLCIAAGRKDKLRPGDILGALTGDAGIPGKQVGKIA 424
             L W  ++   N    PL   M TLCI  G+K K+R GD+LGALTGD G+ G  +GKIA
Sbjct: 362 MKLNW--MNGPTNSTVVPLQAEMATLCIDGGKKAKMRAGDVLGALTGDIGLDGADIGKIA 419

Query: 425 IFDFQAFVAVERALAKQAMQRLNSGKIKGRALKVRII 461
           +     +VAV + +A +A ++L +GKIKG+A +VR++
Sbjct: 420 VHPAHVYVAVRQGVAHKAFKQLQNGKIKGKACRVRLL 456