Pairwise Alignments

Query, 461 a.a., ATP-dependent RNA helicase, specific for 23S rRNA from Pseudomonas putida KT2440

Subject, 457 a.a., ATP-dependent RNA helicase DbpA from Enterobacter sp. TBS_079

 Score =  467 bits (1202), Expect = e-136
 Identities = 247/457 (54%), Positives = 314/457 (68%), Gaps = 3/457 (0%)

Query: 6   TAFATLP-LSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGL 64
           TAF+TL  L  A L NL  LGY +MTP+QA +LP IL+G+D+  QAKTGSGKTAAFG+GL
Sbjct: 2   TAFSTLNVLPAAQLDNLNELGYLTMTPVQAATLPAILEGRDVRVQAKTGSGKTAAFGLGL 61

Query: 65  LNPINPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEH 124
           L  I+   F  Q+LVLCPTRELADQVA ELRRLAR   N KILTLCGG   G Q  SL+H
Sbjct: 62  LQHIDAALFQTQSLVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQH 121

Query: 125 GAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTL 184
             HIIV TPGR+  HL KGT+ LD L+TLV+DEADRMLDMGF DAI  +I   P+ RQTL
Sbjct: 122 PPHIIVATPGRLLDHLQKGTVSLDALHTLVMDEADRMLDMGFSDAIDEVIRFAPADRQTL 181

Query: 185 LFSATYPAGIKQLAADFMRNPQQVKVESLHTDNQIEQRFIEIDPQQRLEAVTRVLGHYRP 244
           LFSAT+P  I  ++    +NP  ++++S+     IEQ+F E     ++  + +VL  ++P
Sbjct: 182 LFSATWPEAIAAISGRVQKNPLTIEIDSVDALPAIEQQFYETSQHGKIALLQKVLSQHQP 241

Query: 245 QSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVATDVA 304
            SCV FC TK+ C+ V   L A G  A +LHGDLEQRDRDQ L  FAN S+ VLVATDVA
Sbjct: 242 ASCVVFCNTKKDCQAVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301

Query: 305 ARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAIEALQN 364
           ARGLDI  L++V+N ELA D E+HVHR+GRT RAG  G+A+S  AP E  RA  +  +  
Sbjct: 302 ARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANILSEMLQ 361

Query: 365 SPLRWDQLDSLKNKGGEPLLPVMTTLCIAAGRKDKLRPGDILGALTGDAGIPGKQVGKIA 424
             L W  +++  N    PL   M TLCI  G+K K+RPGD+LGALTGD G+ G  +GKI 
Sbjct: 362 IKLNW--VNAPGNVSLVPLEAEMATLCIDGGKKAKMRPGDVLGALTGDVGLDGADIGKIT 419

Query: 425 IFDFQAFVAVERALAKQAMQRLNSGKIKGRALKVRII 461
           +     +VAV +++A +A ++L +GKIKG+  +VR++
Sbjct: 420 VHPAHVYVAVRQSVAHKAWKQLQNGKIKGKTCRVRLL 456