Pairwise Alignments

Query, 602 a.a., Lipid A export ATP-binding/permease protein MsbA from Pseudomonas putida KT2440

Subject, 605 a.a., ABC transporter, transmembrane region (NCBI) from Rhodospirillum rubrum S1H

 Score =  341 bits (874), Expect = 6e-98
 Identities = 211/593 (35%), Positives = 333/593 (56%), Gaps = 18/593 (3%)

Query: 12  SSLKIYFRLLS-YVKPYVGIFLLSIVGFVIFASTQPMLAGILKYFVDGLSNPEAVLFPNV 70
           S+L++  RL+  ++    G+  L+++  +  A++   +A ++K  V+           +V
Sbjct: 18  STLRLVGRLIKDHLAQQWGLIALAVLCMLAVAASTSAIAWLMKPAVN-----------DV 66

Query: 71  PYLRDLQLLQAVPLLIILIAAWQGLGSFLGNYFLAKVSLSLVHDLRVALFNKLLVLPNRY 130
               D  +L  + L   +    +GL ++     + +V L +V   R AL++ L  +   +
Sbjct: 67  FARHDRDVLMLIALAFPVAFVLKGLANYGQRTLMNRVGLRVVQRCREALYDHLQGMDIAF 126

Query: 131 FDNHNSGHLISRITFNVTMVTGAATDAIKVVIREGLTVVFLFAYLLWMNWHLTLVMVAIL 190
           F    +  L+SR T ++T++    T  I VV R+ +T+V L   L  ++  L L+ V + 
Sbjct: 127 FAQQQTAALVSRFTVDLTLLKNTITSGIMVVGRDAVTMVSLVVSLFLLDIELALIAVTVF 186

Query: 191 PVIAVMVSIASKKFRKQSKKIQVAMGDVTHVASETIQGYRVVRSFGGEAYEQQRFGQASQ 250
           P   + +++  K+ RK ++ +Q   G +  +  +  Q  RVV+ +    +E+ R      
Sbjct: 187 PAAVLPIALLGKRVRKAARGMQAQSGQLDALLLQVFQAIRVVKVYNAGEHERARVAATVD 246

Query: 251 SNTDKQLRMTKTGSLYTPMLQLVIYSAMAALMFL--VLFLRGDSTAGDLVAYITAAGLLP 308
                 +R  + G+  + +++++   A AA++         GD   G   A+IT+  LL 
Sbjct: 247 RIYRHLMRSERIGAAISMVVEILSGFAFAAVVIYGGQRVTAGDLDPGTFFAFITSLFLLY 306

Query: 309 KPIRQLSEVSSTIQKGLAGAESIFEQLDEAPEVDTGTVEKERVEGRLEV--RNLSFTYPG 366
           +PI+++  V+   Q+G+A  E ++  +D  P +  G      V G  E+   ++  TYP 
Sbjct: 307 QPIKRIGGVNVVAQEGMAAVERMYGVIDTPPALREGKDAPALVVGGGEIVFDDVRLTYPT 366

Query: 367 TEREVLSDISFVAEPGQMIALVGRSGSGKSTLAALIPRFYHHDKGQILLDGVEIEHYRLR 426
            E   L  +SF A  G  +ALVGRSG+GKST   L+PRFY  D G++L+DG ++     R
Sbjct: 367 QEGPALDGLSFRAPAGATVALVGRSGAGKSTALQLVPRFYDADGGRVLIDGQDVRAVTFR 426

Query: 427 NLRRHVSQVTQHVTLFNDTVANNIAYGDLAGAPRADIEAAAADAYAKEFVDRLPKGFDTE 486
           +L   ++ VTQ + LF+D+V  NIAYG   GA +A+IE AA  A A +F+  LP+G+DT 
Sbjct: 427 SLWAAIAMVTQEIILFDDSVRANIAYGR-PGASQAEIEDAARHAAAHDFILALPEGYDTV 485

Query: 487 VGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDHVMQGRTTL 546
           +GE G  LSGGQRQRL IARA+LKNAP+L+LDEATSALDTESERH++ A + + QGRT +
Sbjct: 486 IGEQGTRLSGGQRQRLVIARAMLKNAPILLLDEATSALDTESERHVRQAFERLRQGRTCI 545

Query: 547 VIAHRLSTIEKADQILVMDQGRLVERGTHTELLAANGHYARLHAMGL-DEPAK 598
           V+AHRLST+  AD I V+D GR+VE G+H  LLA  G YA L A  L DEPA+
Sbjct: 546 VVAHRLSTVMNADIIHVIDAGRIVESGSHAALLAEGGLYADLCATDLSDEPAE 598