Pairwise Alignments

Query, 602 a.a., Lipid A export ATP-binding/permease protein MsbA from Pseudomonas putida KT2440

Subject, 604 a.a., lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA (RefSeq) from Shewanella loihica PV-4

 Score =  454 bits (1167), Expect = e-132
 Identities = 247/592 (41%), Positives = 367/592 (61%), Gaps = 19/592 (3%)

Query: 16  IYFRLLSYVKPYVGIFLLSIVGFVIFASTQPMLAGILKYFVDGLSNPEAVLFPNVPYL-- 73
           ++ RLL+Y+ P  G+  LS+ G V++          +K F+D      A   P  P L  
Sbjct: 12  VFLRLLTYLVPLKGVLFLSVFGLVLYGLVDATFIYSIKPFID---QGFASNVPTTPGLVE 68

Query: 74  -----------RDLQLLQAVPLLIILIAAWQGLGSFLGNYFLAKVSLSLVHDLRVALFNK 122
                       D  +L+  P ++I +   +GL +FL  Y ++ +S  ++ D+R  +F  
Sbjct: 69  GVDLGMGGGFNSDSDVLKTAPFVVIGLFTLRGLANFLSTYGISYISARMIMDMRQQVFEH 128

Query: 123 LLVLPNRYFDNHNSGHLISRITFNVTMVTGAATDAIKVVIREGLTVVFLFAYLLWMNWHL 182
            L LP  Y D  +SG+LISR+TF+   +  A+  A+  ++R+G+TV+ +   + + +W L
Sbjct: 129 YLRLPVSYIDAESSGNLISRVTFDTEQIARASGSALITIVRDGITVIGMLGVMFYNSWKL 188

Query: 183 TLVMVAILPVIAVMVSIASKKFRKQSKKIQVAMGDVTHVASETIQGYRVVRSFGGEAYEQ 242
           +L ++ + P+I +++++ S+KFRK SK+IQ AMG VT V  + I+G++ V  FGG+  E 
Sbjct: 189 SLCILIVGPLIGLVIAVVSRKFRKVSKQIQTAMGGVTSVTEQMIKGHKNVLVFGGQQAES 248

Query: 243 QRFGQASQSNTDKQLRMTKTGSLYTPMLQLVIYSAMAALMFLVLF--LRGDSTAGDLVAY 300
           QRF + +  N  + +++    ++  P++ ++   A+A +++      +R D TAG     
Sbjct: 249 QRFAKVNDDNRSRTMKLALAQAISQPLVMVIGSLALAFVLYASSLESMRADLTAGTFATI 308

Query: 301 ITAAGLLPKPIRQLSEVSSTIQKGLAGAESIFEQLDEAPEVDTGTVEKERVEGRLEVRNL 360
           + A   + +PI+ L+ V++  Q+G+A   +IF  LD   EVD GT E +RVEGRL    +
Sbjct: 309 LAAMLAMLQPIKSLTRVNAEFQRGIAACSTIFAVLDTPAEVDNGTFETKRVEGRLSFDKV 368

Query: 361 SFTYPGTEREVLSDISFVAEPGQMIALVGRSGSGKSTLAALIPRFYHH-DKGQILLDGVE 419
           +F Y   E   L ++ F   PG+ +ALVGRSGSGKST+A+LI RFY   D G I LD V 
Sbjct: 369 NFRYNNQEGLALKEVDFQVNPGETLALVGRSGSGKSTIASLITRFYSDLDSGDIRLDDVS 428

Query: 420 IEHYRLRNLRRHVSQVTQHVTLFNDTVANNIAYGDLAGAPRADIEAAAADAYAKEFVDRL 479
           +  Y+L  LRR V+ V+Q VTL NDT+A NIAY          I  AA  A A EF+  +
Sbjct: 429 LRDYKLAALRRQVALVSQQVTLINDTIAANIAYAYPGEVTEEQIIDAAKLANAWEFICNM 488

Query: 480 PKGFDTEVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDHV 539
           P+G  T+VGENGV+LSGGQRQR+AIARA+L++AP+LILDEATSALDTESE+ IQ  LD++
Sbjct: 489 PEGIYTQVGENGVMLSGGQRQRIAIARAILRDAPILILDEATSALDTESEKAIQTGLDNL 548

Query: 540 MQGRTTLVIAHRLSTIEKADQILVMDQGRLVERGTHTELLAANGHYARLHAM 591
            Q RT++VIAHRLST+E A+QILV+DQG++VERGTH+ELLA  G Y  L+ M
Sbjct: 549 RQNRTSIVIAHRLSTVENANQILVVDQGKVVERGTHSELLAKQGIYYNLYQM 600