Pairwise Alignments

Query, 602 a.a., Lipid A export ATP-binding/permease protein MsbA from Pseudomonas putida KT2440

Subject, 611 a.a., ABC transporter, ATP-binding protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  311 bits (797), Expect = 5e-89
 Identities = 199/606 (32%), Positives = 324/606 (53%), Gaps = 30/606 (4%)

Query: 14  LKIYFRLLSYVKPYVG-IFLLSIVGFVIFASTQPMLAGIL-------------KYFVDGL 59
           L++  R +S  K Y+G   LL+I+  V    +  +L  IL             +Y   G 
Sbjct: 5   LQLMRRFVSPYKKYIGWAILLNILSAVFNVFSFTLLIPILDILFKTGENNKVYEYMEWGT 64

Query: 60  SNPEAVLFPNVPYLRDLQLLQAVP--------LLIILIAAWQGLGSFLGNYFLAKVSLSL 111
           +  + V   N  Y     +    P        L + L+  ++    F  +  +  +   +
Sbjct: 65  AGFKDVAINNFYYYVSQMIQDNGPTTALIFLGLFLALMTLFKTSCYFASSAVMIPLRTGV 124

Query: 112 VHDLRVALFNKLLVLPNRYFDNHNSGHLISRITFNVTMVTGAATDAIKVVIREGLTVVFL 171
           V D+R+ ++ K++ LP  +F     G +I+R++ +V  V  + T ++ ++I+  + ++  
Sbjct: 125 VRDIRIMVYAKVMRLPMGFFSEERKGDIIARMSGDVGEVENSITSSLDMLIKSPIMIILY 184

Query: 172 FAYLLWMNWHLTLVMVAILPVIAVMVSIASKKFRKQSKKIQVAMGDVTHVASETIQGYRV 231
           F  L+  +W LTL  V +LP +  ++    +K ++QS + Q    D      ET+ G R+
Sbjct: 185 FITLIATSWKLTLFTVLVLPAMGWLMGKVGRKLKRQSLEAQGKWSDTMSQLEETLGGLRI 244

Query: 232 VRSFGGEAYEQQRFGQASQSNTDKQLRMTKTGSLYTPMLQLVIYSAMAALMF----LVLF 287
           +++F  E     RF + S    D   ++    +L  PM + +    + ++++    L+L 
Sbjct: 245 IKAFIAEDRMIDRFTRCSNELRDAVNKVAMRQALAHPMSEFLGTILIVSVLWFGGALILG 304

Query: 288 LRGDSTAGDLVAYITAAGLLPKPIRQLSEVSSTIQKGLAGAESIFEQLDEAPEVDTGTVE 347
                TA   + Y+     +  P++  ++    I KGLA  E + + L     +      
Sbjct: 305 HNSSLTAPTFIFYMVILYSVINPLKDFAKAGYNIPKGLASMERVDKILKAENNIKEIPNP 364

Query: 348 KER--VEGRLEVRNLSFTYPGTEREVLSDISFVAEPGQMIALVGRSGSGKSTLAALIPRF 405
           K    +  R+E +++SF+Y G +REVL  ++     G+ +ALVG+SGSGKSTL  L+PR+
Sbjct: 365 KPLTGMNDRIEFKDISFSYDG-KREVLKHVNLTVPKGKTVALVGQSGSGKSTLVDLLPRY 423

Query: 406 YHHDKGQILLDGVEIEHYRLRNLRRHVSQVTQHVTLFNDTVANNIAYGDLAGAPRADIEA 465
           +    G I +DG  I+  R+ +LR  +  V Q   LFNDT  NNIA+G +  A    +  
Sbjct: 424 HDVQGGDITIDGTSIKDVRIADLRSLIGNVNQEAILFNDTFFNNIAFG-VENATMEQVIE 482

Query: 466 AAADAYAKEFVDRLPKGFDTEVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALD 525
           AA  A A +F+   P+G++T +G+ G  LSGGQRQR++IARA+LKN P+LILDEATSALD
Sbjct: 483 AAKIANAHDFIMEKPEGYNTNIGDRGGKLSGGQRQRVSIARAILKNPPILILDEATSALD 542

Query: 526 TESERHIQAALDHVMQGRTTLVIAHRLSTIEKADQILVMDQGRLVERGTHTELLAANGHY 585
           TESER +Q AL+ +M+ RTT+ IAHRLSTI+ AD+I V+ +G +VERG H ELL  +G+Y
Sbjct: 543 TESERLVQEALERLMKTRTTIAIAHRLSTIKNADEICVLYEGEIVERGRHEELLELDGYY 602

Query: 586 ARLHAM 591
            RL+ M
Sbjct: 603 KRLNDM 608